Gene VSAL_I1989 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_I1989 
Symbol 
ID6987495 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011312 
Strand
Start bp2131373 
End bp2133082 
Gene Length1710 bp 
Protein Length569 aa 
Translation table11 
GC content38% 
IMG OID643380288 
ProductABC transporter ATP-binding protein 
Protein accessionYP_002263377 
Protein GI209695448 
COG category[R] General function prediction only 
COG ID[COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase 
TIGRFAM ID[TIGR01166] cobalt transport protein ATP-binding subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0915836 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGTAA CCTTTTCTAA TTTCTCTTTT CGATATGCGT CACAGGATAA ACCGACGCTT 
AAAAATATCA ATCTAAGGAT AGAACAAGGC GAAAAGATTG TGATTATCGG GCCAAGTGGC
AGCGGTAAAT CAACATTAGG TCAATGTTTA AATGGCTTAA TCCCTCACAC AATTAAAGGT
GAGGTAGAAG GACAACTGTT CATTAATGAA TGCGATGTTG CTGATTGGAA AATCGAACAA
TACACTGAGA ATGTGGGTAC TGTTTTACAA GATACAGACA GTCAATTTGT TGGATTAACG
GTTGGGGAAG ATATTGCCTT TGCACTTGAG AATCAAATGA TCTCAAAAGC TGAAATGTAC
CCAGTTGTTC GCGATGTTGC CAAAATGGTA GATTTGACCG CACTACTTAA AAAGTCACCT
TATGATTTGA GTGGTGGTCA AAAGCAACGT GTGTCATTGG GTGGTATTCT GGTCGATAAT
GTCGATATTC TATTATTTGA TGAACCTTTG GCAAGCCTAG ATCCTAAAAC AGGTAAGGCA
ACGATTGAGA TCATTGATGA GCTTCATAAA AATCGTGGCA AAACGGTTAT TATTATTGAG
CACCGCTTAG AGGATGTTTT ACATCGTTCT ATCGATCGAG TGATCTTAAT GGATCAAGGC
GAGATTGTTG CAGATACAAC CCCTGATAAA CTGCTGCAAA CATCACTGCT TGTTGAGCAT
GGTATCCGTG AACCACTTTA TATCTCTGCA TTAAAATCCA GTGGGTTTGA TATATCTCAA
GAGCCGCACA TCAGTCAGCT TTCATCATTA GATAGTCAAA AAATAGCGTT AAGTATGAAC
CAATGGTTTG TAAATACCGA CAGTGATGCT CTTGTTGAAA GTAAAACAGA AGCATTACTT
TGTATTGATA ACTTAACTTA TTCTTATGAT GGCGACGTTA ACGCATTAGA TAATATTTCT
TTTAATGTAA ACAAAGGCGA ATTTGTTTCA ATTTTAGGTA AAAATGGTTC AGGTAAGTCA
ACCATTACAA AATTGATCAT GGGTGTTTTA CAACCGGATC TGGGTTCGAT CAGTTTGAAT
GGACAAGATT TAAGTCAATT ATCCATTTCT GAACGCTCCC AAAAAGTGGG CGTTGTTTTA
CAAAACCCAA ATCATATGAT CTCGCATCAC ATGATTTTTG ATGAAATCGC ATTTGGCTTA
GTTAATAGCG GCCTCTCTGA GGCAGAGATT GAGAGTAAAG TAACAAAAGC ATTAGATTTG
TGTGGATTAC GTCGTTTCCG TCATTGGCCT ATTGATGCAT TGAGTTACGG GCAGAAAAAA
CGAGTGACCA TCGCGTCAAT TCTTGTTCTT GAACCTGAAT TATTGATCCT TGATGAACCA
ACGGCAGGTC AAGATTATCG AAATTATACA TCAATGCTTC ACTTCATTAA CGAGCTGAAC
CAAACGTTGG GTTTAACAGT GATTATCATT TCTCATGATA TGCATTTAGT GCTTGAGCAT
ACCACTCGTG CCATTGTGAT TGCAGATAGC CATTGTGTTG CGGATGACCG CGTTATTTCT
ATATTTAGCC AACCAGAATT ATTAGATAAA GCCAATTTGA CGGTGACCAG TTTGTATGAG
CTGGTTAATA AAGCAGGCAT AAAGAATATA ACGGGCTTTA TGAATCAGTT TATTAGCACT
GAGCGTGAGA GCGATAAGAA TGTCCACTAA
 
Protein sequence
MSVTFSNFSF RYASQDKPTL KNINLRIEQG EKIVIIGPSG SGKSTLGQCL NGLIPHTIKG 
EVEGQLFINE CDVADWKIEQ YTENVGTVLQ DTDSQFVGLT VGEDIAFALE NQMISKAEMY
PVVRDVAKMV DLTALLKKSP YDLSGGQKQR VSLGGILVDN VDILLFDEPL ASLDPKTGKA
TIEIIDELHK NRGKTVIIIE HRLEDVLHRS IDRVILMDQG EIVADTTPDK LLQTSLLVEH
GIREPLYISA LKSSGFDISQ EPHISQLSSL DSQKIALSMN QWFVNTDSDA LVESKTEALL
CIDNLTYSYD GDVNALDNIS FNVNKGEFVS ILGKNGSGKS TITKLIMGVL QPDLGSISLN
GQDLSQLSIS ERSQKVGVVL QNPNHMISHH MIFDEIAFGL VNSGLSEAEI ESKVTKALDL
CGLRRFRHWP IDALSYGQKK RVTIASILVL EPELLILDEP TAGQDYRNYT SMLHFINELN
QTLGLTVIII SHDMHLVLEH TTRAIVIADS HCVADDRVIS IFSQPELLDK ANLTVTSLYE
LVNKAGIKNI TGFMNQFIST ERESDKNVH