Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I1987 |
Symbol | rluF |
ID | 6987494 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 2129295 |
End bp | 2130239 |
Gene Length | 945 bp |
Protein Length | 314 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 643380284 |
Product | ribosomal large subunit pseudouridine synthase F |
Protein accession | YP_002263375 |
Protein GI | 209695446 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.514849 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACATCAC CAGAACCTAA ACTAACTCGT TTAAACAAAT ACATTAGTGA TACGGGTTAT TGCTCACGAA GAGAAGCTGA TAAATTGATT GATCAGCAGC GAATTACTAT TAATGGCAAC GTTCCTGAAA TGGGTACAAA AGTAGCTGAA GGTGATGATG TTCTGGTTGA TGGAAAACCA TTGAAAGCAA AGCAAGAACG TATCTATATT GCATTCAATA AGCCAGTCGG TATTACCTGT ACAAGCGAAC GTCATGTCGA AGGTAATATT ATTGATTATA TTAACCACGA ACAGCGTATT TTTCCTATTG GTCGATTGGA CAAGCCGTCT GATGGTTTGA TTTTCTTAAC CAGTGATGGA GATATCGTTA ATAAGATTCT TCGTGCGGGC AATGCGCATG AAAAAGAATA TGTCGTTCGT GTTGATAAAC CTATTACTGA TGACTTTCTA GCACAAATGG CGGCGGGTGT TCCTATTTTA GATACCGTAA CGCTACCTTG TCAGGTTAAA CAAGAATCAC GTTTTGTTTT CCGAATTACG TTAACGCAAG GTTTAAATCG TCAAATTCGT CGTATGTGTG AATACTTAGA TTATGAAGTA TTTAAACTTA AACGCGTTCG AATTATGAAT ATTGACTTAG GCACACTTGC GTCTGGTGAA TGGCGTTATT TAACGGCTTC AGAGATGGAA CAAATCAATA ATATGATTGG TACATCAAGT AAGACAGAAG AAGCGTCACG TAAAGTGAAA GAAGTTGATG GGAAAATTAG GACCATCAAA AAGGCAAGTT CTGGACGTAA TCATCATTCG AATAATACAT TTAGTCAAAA ACGCCGTGAA GAATCGAAAG ATCGTGGTTT TGGTAAATCG TACTCTCAAC GAAGAGATGA GGGTAAAGAT CAAGATAAAC CGCAGTCGAC TATTAAAGTA TGGCGAGCAA AATAA
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Protein sequence | MTSPEPKLTR LNKYISDTGY CSRREADKLI DQQRITINGN VPEMGTKVAE GDDVLVDGKP LKAKQERIYI AFNKPVGITC TSERHVEGNI IDYINHEQRI FPIGRLDKPS DGLIFLTSDG DIVNKILRAG NAHEKEYVVR VDKPITDDFL AQMAAGVPIL DTVTLPCQVK QESRFVFRIT LTQGLNRQIR RMCEYLDYEV FKLKRVRIMN IDLGTLASGE WRYLTASEME QINNMIGTSS KTEEASRKVK EVDGKIRTIK KASSGRNHHS NNTFSQKRRE ESKDRGFGKS YSQRRDEGKD QDKPQSTIKV WRAK
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