| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1963 |
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| Symbol | |
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| ID | 6988154 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 2104217 |
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| End bp | 2105389 |
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| Gene Length | 1173 bp |
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| Protein Length | 390 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 643380261 |
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| Product | putative secretion protein, HlyD family |
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| Protein accession | YP_002263352 |
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| Protein GI | 209695423 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000072673 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATTGTTT TTACAGTTTA TTGCGTCATC TTTACATTCA TTGACGAACA AATGCCTTTT
CACTTGGTAA ACTATGTTCA CTCACTGAAT TCCATAATTA AAATAAGTCA CAGTATGAAT
CAAACAAAGT CTATCGCCCT TGCCGTTTTA TTAGCATGTA CTTTATCTAC ACTTTCTTAT
GCTAAAAGAC CAACCAGTAA TGAATCTGTT GCTGTTGTTG CTGAAGAAGT AGCAACTCAT
GAGATATCTC AGTCTTTATC GTTAATTGGA AAGCTTGAAG CCGCAGAATC CGTCATTATT
TCACCTGAAG TTTCAGGAAA AGTCGATCGT ATTGCGATTA AGGCCAATCA AACGGTGAAA
AAAGGTCAGC TATTGATTCA GTTAAATGAT GATAAAGCAA AAGCGGTAAT AAAAGAGGCT
CAAGCGTATT TACATGATGA ACAACGTAAA TTAAAAGAGT TTCAGCGTTT GTCGAAAAAG
AATGCGATTA CTCAAACTGA GATTGATGGG CAAAAAGCCA GTGTAAATAT TGCACAGGCA
CGTTTAGAAG CCGCAAATGC TGAATTACGT GACTTACATA TCTCAGCGCC TTTTGCCGGA
ACGGTTGGTT TTATTGATTT TAGCTTAGGT AAAATGGTCA GTGTTGGTAG TGAATTACTT
ACATTGGACA ACCTTTCTTT AATGCAATTG GATTTACAAG TGCCTGAGCG TTATTTATCA
ATGCTATCAA CAAGGATGAA AGTCGAGGCT AAGAGCCAAG CATGGGGAGA TCTTGAGTTC
TCTGGTGAAG TGGTTGGTAT TGATTCTCGT ATAAATGCAG AAACACTTAA TTTACGCATT
CGAATTGATT TTCCTAATAA AGAACTAAAA ATGAAGCCGG GTATGTTAAT GGCCGCAACG
TTGGATTTTC CTGCTATTAA TGCACCGATT ATTCCTGTTC AAGCACTTGA GTATTCAGGT
ACAAAACGTT ATGTGTATGT CATTGGTGAT GATAATAAAG TGATTCGTAC GGAAGTGGTT
TTAGGTGCTC GTGTAGAAAA CCGAGTGGTT ATTGAAAAAG GCTTGGATAT AGGCCAAGAC
ATTGTTGTTC AAGGTCTTGT CAATATGCGT GATGGTGTAA CGGTTAAAAT GATCTCAACA
GATGCTGAGA CGATAAAAGC TGAGGTTCAA TAA
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| Protein sequence | MIVFTVYCVI FTFIDEQMPF HLVNYVHSLN SIIKISHSMN QTKSIALAVL LACTLSTLSY
AKRPTSNESV AVVAEEVATH EISQSLSLIG KLEAAESVII SPEVSGKVDR IAIKANQTVK
KGQLLIQLND DKAKAVIKEA QAYLHDEQRK LKEFQRLSKK NAITQTEIDG QKASVNIAQA
RLEAANAELR DLHISAPFAG TVGFIDFSLG KMVSVGSELL TLDNLSLMQL DLQVPERYLS
MLSTRMKVEA KSQAWGDLEF SGEVVGIDSR INAETLNLRI RIDFPNKELK MKPGMLMAAT
LDFPAINAPI IPVQALEYSG TKRYVYVIGD DNKVIRTEVV LGARVENRVV IEKGLDIGQD
IVVQGLVNMR DGVTVKMIST DAETIKAEVQ
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