Gene VSAL_I1950 details

Gene Information

• Locus tag: VSAL_I1950
• Symbol: oppF
• ID: 6988936
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 2087013
• End bp: 2088005
• Gene Length: 993 bp
• Protein Length: 330 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 643380245
• Product: oligopeptide transport ATP-binding protein F
• Protein accession: YP_002263339
• Protein GI: 209695410
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG4608] ABC-type oligopeptide transport system, ATPase component
• TIGRFAM ID: [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCAGCAG ATAAAAAACT TCTTTTGGAA GTCAAAAACT TAAAAGTTCA TTTTAGTATT 
GCATCTAAAT CAGTGTGGCC ATGGGTAAAA CCAGCCAACT TAAAAGCGGT TGATGGGGTG 
AATGTTCGCT TGTATGAAGG TGAGACTCTA GGTGTTGTTG GTGAATCTGG TTGTGGTAAA 
TCTACTTTTG CTCGAGCGAT TATCGGTTTA GTTGAAGCCA CCGAGGGTGA AGTTCTTTGG 
CTTGGTCAAG ATTTGACGAA GTTGGATGAT GAGCCTTTAC GCCAAAAACG AAAAGAGATT 
CAAATGATCT TCCAGGATCC GCTGGCGTCT TTGAATCCTA GAATGACTGT TGGTGATATC 
ATTGCTGAAC CTCTGCAAAC GTTTTATCCT AAACTTACGA AAGAAGAGGT GAAGGATCGA 
GTAAAAGAGA TGATGATGAA GGTTGGTTTG TTACCAAACG TCATTAACCG TTATCCACAT 
GAATTCTCTG GTGGTCAATG TCAGCGCATC GGAATTGCAC GAGCCTTGAT ACTTAAACCA 
AAAATGATCA TCTGTGATGA GCCAGTATCG GCGCTTGATG TTTCTATTCA AGCTCAAGTT 
GTTAACTTAC TTAAAGAGTT ACAAAAAGAA TTAGGTTTAA GCTTAGTTTT TATTGCTCAT 
GACCTTTCTG TGGTTAAGCA CATTTCTGAT CGCGTACTTG TTATGTATTT AGGTAACGAA 
GTTGAGTTAG GTGAATCTGA TGCTTTGTTT AGCGATCCTA AACACCCGTA CACAAAAGCA 
TTAATGTCAG CGGTACCAAT CCCAGATCCT AAACTTGAAA GAGCAAAGGT GATTGATATG 
CTAGAAGGGG ATCTTCCTTC TCCAATCAAT CCGCCATCAG GGTGCGTGTT TAGAACGCGT 
TGCCCACAAG CAACGGAAAT ATGTGCACAA ACAAAACCTG AGCTTAAAGG CACTGATGTT 
CATGCTGTCT CTTGTTTAGC GGTAACTAGC TAA 

 

Protein sequence

MSADKKLLLE VKNLKVHFSI ASKSVWPWVK PANLKAVDGV NVRLYEGETL GVVGESGCGK 
STFARAIIGL VEATEGEVLW LGQDLTKLDD EPLRQKRKEI QMIFQDPLAS LNPRMTVGDI 
IAEPLQTFYP KLTKEEVKDR VKEMMMKVGL LPNVINRYPH EFSGGQCQRI GIARALILKP 
KMIICDEPVS ALDVSIQAQV VNLLKELQKE LGLSLVFIAH DLSVVKHISD RVLVMYLGNE 
VELGESDALF SDPKHPYTKA LMSAVPIPDP KLERAKVIDM LEGDLPSPIN PPSGCVFRTR 
CPQATEICAQ TKPELKGTDV HAVSCLAVTS