| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1938 |
|---|
| Symbol | lpxH |
|---|
| ID | 6987468 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 2073336 |
|---|
| End bp | 2074061 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 643380236 |
|---|
| Product | UDP-2,3-diacylglucosamine hydrolase |
|---|
| Protein accession | YP_002263330 |
|---|
| Protein GI | 209695401 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2908] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01854] UDP-2,3-diacylglucosamine hydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTATCC TATTTATCTC CGATCTGCAC CTCTGCCCTA CTCGCCCTGA AATCACAACC
TGCTTTCTTG ATTTTATGGA GAATGAAGCC GTACACGCTA AAGAGCTGTA TGTCTTAGGT
GATCTCTTCG AATTTTGGAT TGGTGATGAT GATAACTCTT CATTTAGTTC ATTAATTAAA
AATGCCTTTA CGACATTAAC CAACCAAGGT GTCCATTGTT TTTTCATCCA AGGAAATCGT
GACTTTTTAT TAAATAAACG ATTCTGTAAA GAAACGGGCA TCACCTTACT TGCCGATCAT
ACCGTAATTG ATGTTGATGG AAAAAAAGTG CTGATCATGC ATGGTGACAC GCTTTGCATT
GACGACGTTA AATATCAAGA ATTCAGAGCA AAAGTTCATC AACCGTGGCT ACAGTGGATT
TTCAATCGTA TCCCGTTATT TATTCGCCAG CATATTGTCA AAAATGTACA AGATAAAATA
AAAGAAAAAA AACAGCATAA AACATTATCA ATAATGGATG TCACCCAAAG TGAAGTCGAA
AGAGTCATGC ATGAAGAAGG CGTCAACCTA TTAATTCATG GTCATACTCA TCGTCCAGAC
ACTCATTCTT TCACAGTAAA TGATAATCAA ATGACAAGAA TTGTGCTTGG CGATTGGTAC
ACGCAAGGCT CAATACTTAC CTATAAAGAC AATACATTTA CACTTTTAAA TAAAAGCTTT
AAATAA
|
|---|
| Protein sequence | MTILFISDLH LCPTRPEITT CFLDFMENEA VHAKELYVLG DLFEFWIGDD DNSSFSSLIK
NAFTTLTNQG VHCFFIQGNR DFLLNKRFCK ETGITLLADH TVIDVDGKKV LIMHGDTLCI
DDVKYQEFRA KVHQPWLQWI FNRIPLFIRQ HIVKNVQDKI KEKKQHKTLS IMDVTQSEVE
RVMHEEGVNL LIHGHTHRPD THSFTVNDNQ MTRIVLGDWY TQGSILTYKD NTFTLLNKSF
K
|
|---|
| |