Gene VSAL_I1918 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_I1918 
Symbol 
ID6987454 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011312 
Strand
Start bp2051215 
End bp2052375 
Gene Length1161 bp 
Protein Length386 aa 
Translation table11 
GC content40% 
IMG OID643380219 
ProductMFS transporter 
Protein accessionYP_002263313 
Protein GI209695384 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000771845 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAACACAA CAACATCAAC TCAATCACAA TCTGGTTTAT TCGTTCCAGT GATTGCACTT 
TCTTTATTTG CTATAGCATC TGGGTACTTA ATGAGTCTTA TCCCATTGAT GTTAAGTCAA
TATGGAATGG AGGCGAAATA CGCCAGTTGG TTAGCAAGTG CTTTCTATGC AGGCCTATTA
GTTGGCGCAG GGCTAATTGA ACCTTTTGTT GCTCGTCTTG GTCACAAAAA TGCATTTGTA
TTATTCTTAG CATTACTTGC TGCAACTATC GTGATCTTAC CTGTAGCCCC TGTTGAGTGG
GTATGGATGA CTCTTCGTTT TGTGGCTGGT ATTGCGGTTG CAGGCGTTTT TGTTGTTGTT
GAATCTTGGC TGCTTATTGG TGACGCTGAA AGTCGTCCAA AACGCTTAGG TTTATACATG
GGTGCTTTAT ACGGTGGTTC ATCTTTAGGT CAACTGGGTA TCGGTTTTAT TGGTATTGAA
GGGTTACTTC CTTATTACAT GATCATTGGC TTACTTATGA TGGCTATTGC ATGCTTACTG
TTTGGTAAAG GTGCTCAGCC CCAAGTTCAG CATCATAATG TATTAAACCT AAAACAAATT
TTAAAACTAA ACAAAGCGTC GATTATGGGC TGTGTTGTTT CTGGTTTATT ACTCGGTGCA
GTTTATGGAC TGATGCCTCT AGAACTAAAA CACCGTAATA TTAATATCAC TCAAATTGGC
AGCTTAATGG CGTTGATTGT TTTAGGTGGA ATGGCAGTTC AACCATTAGT TTCGTACTTA
TCTCGACACT TAGGGAAAAC ATTATTGATG GCATTATTCT GCGTGCTGGG CGTTTTTGCT
ATTGGATTAA CTACGCTAAG TGACCATGCT GCCGTTCTAG CAACCTCATT GGTGCTTCTA
GGTATGGCCG CTTTTGCTAT TTATCCTATT GCTATCTCTT TGGGTTGTGA TCAGTTGGAT
GAGTCTTACA TTGTTTCAGC AACACAAGTA ATGCTATTTA GCTATAGCAT TGGTTCTGTA
TGTGGCCCTG TATTAGCAAA TACACTAATG AACACTGCTG AAGGTTTAAT GAGCTATTTA
TTCGCCATTC TACTAGCGAC CGCTATTTAT ATGTTACTAG CGAGTATGCG CCAACAGCGA
CCAATGGTTG CTGGTGAATA A
 
Protein sequence
MNTTTSTQSQ SGLFVPVIAL SLFAIASGYL MSLIPLMLSQ YGMEAKYASW LASAFYAGLL 
VGAGLIEPFV ARLGHKNAFV LFLALLAATI VILPVAPVEW VWMTLRFVAG IAVAGVFVVV
ESWLLIGDAE SRPKRLGLYM GALYGGSSLG QLGIGFIGIE GLLPYYMIIG LLMMAIACLL
FGKGAQPQVQ HHNVLNLKQI LKLNKASIMG CVVSGLLLGA VYGLMPLELK HRNINITQIG
SLMALIVLGG MAVQPLVSYL SRHLGKTLLM ALFCVLGVFA IGLTTLSDHA AVLATSLVLL
GMAAFAIYPI AISLGCDQLD ESYIVSATQV MLFSYSIGSV CGPVLANTLM NTAEGLMSYL
FAILLATAIY MLLASMRQQR PMVAGE