Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I1862 |
Symbol | rnt |
ID | 6987429 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 1997835 |
End bp | 1998500 |
Gene Length | 666 bp |
Protein Length | 221 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 643380161 |
Product | ribonuclease T |
Protein accession | YP_002263258 |
Protein GI | 209695329 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases |
TIGRFAM ID | [TIGR01298] ribonuclease T |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.31939 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGAAG TAGAATTACA TAATCAACTG AAACAGCGTT TTCGAGGCTA TTTTCCAGTC GTTATTGATG TTGAAACAGC TGGTTTTAAC TCAAAAACAG ATGCACTTCT TGAGATCTGT GCGGTGACAT TAGCAATGGA TGATGAGGGT TACTTAAAAC CCGCGACAAC AATCCATTTT CATGTAACTC CGTTTGAAGG CGCAAACCTT GAACAAGAAG CATTAGATTT CATCGGTATT CGTGACCCAT TCAGTCCTTT ACGTGGTGCA GTAACAGAAG ATGTGGCTTT AAAAGAAATT TTTAAACTCA TTCGTAAAGA GCAAAAACAG CATGATTGCC GACGCGCTAT CATGGTGGCT CATAATGCCA ATTTTGATCA CAGCTTTGTA ATGGAAGCCG CTGAACGAAC GAAATTAAAA CGCATTCCTT TCCATCCATT CTGTACTTTT GATACTGCCG CAATCAGTGG CTTAGCTCTT GGTCAAACCG TATTAGCGAA AGCGTGTAAA ACGGCAGGAA TGGATTTTGA CGGAAAAGAA GCACACTCTG CTCTTTATGA TACGGAAAAA ACAGCGGAAC TGTTCTGCCA TATCGTAAAT AAATGGAAAG ATCTTGGTGG TTGGCCTCTA GCGCCAGAAC CAGAAAATGA TACTAATAAT AAATAA
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Protein sequence | MSEVELHNQL KQRFRGYFPV VIDVETAGFN SKTDALLEIC AVTLAMDDEG YLKPATTIHF HVTPFEGANL EQEALDFIGI RDPFSPLRGA VTEDVALKEI FKLIRKEQKQ HDCRRAIMVA HNANFDHSFV MEAAERTKLK RIPFHPFCTF DTAAISGLAL GQTVLAKACK TAGMDFDGKE AHSALYDTEK TAELFCHIVN KWKDLGGWPL APEPENDTNN K
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