| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1753 |
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| Symbol | exbD1 |
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| ID | 6988457 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 1867137 |
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| End bp | 1867562 |
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| Gene Length | 426 bp |
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| Protein Length | 141 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 643380062 |
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| Product | TonB system transport protein ExbD1 |
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| Protein accession | YP_002263161 |
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| Protein GI | 209695232 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0848] Biopolymer transport protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00438106 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATTCAAT CCAATAGACA AGAAGAGTTA GATAATCTTC AACCTGACCT CACACCATTA
CTCGATATCA TTTTTATTGT CATGGTATTT TTATTATTAA CCGCAACAGT AAAATTACAA
TCATTAGAAG TCAGCTTACC TTCTGCAGAA AGTGAATCTA TCTCTAGTGT TGATAGTAAG
TCTTTTACTA TCAACATATT AGAAAAGCCA CCTTATTGGG GGCTTGATGG TACACCTTAT
CCTTCTTGGG AGAATTTCAC TCAAGCCCTG TTAAATAAAG TAACTCAAAA ACCAGATTTT
CAAGTTGTTA TTGCTTCAGA TAAAACGGCG GAAATACAAC ATATGATTAA GTTACTCGCC
TTTTTACAAG ACAATAAAAT TAAAGCGACT CAAATTTTAA TGGATGAAAA AACACATGCA
AACTAA
|
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| Protein sequence | MIQSNRQEEL DNLQPDLTPL LDIIFIVMVF LLLTATVKLQ SLEVSLPSAE SESISSVDSK
SFTINILEKP PYWGLDGTPY PSWENFTQAL LNKVTQKPDF QVVIASDKTA EIQHMIKLLA
FLQDNKIKAT QILMDEKTHA N
|
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