| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1752 |
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| Symbol | exbB1 |
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| ID | 6989308 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 1866457 |
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| End bp | 1867137 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 643380061 |
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| Product | TonB system transport protein ExbB1 |
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| Protein accession | YP_002263160 |
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| Protein GI | 209695231 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0811] Biopolymer transport proteins |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00726097 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACTGGTT TTATCAACCT TTATTCACAA CTTGGAATGA TGGCATTACC ATTGTTTATC
TGCTCCGTTC TTACGCTTAT ATTATTGGCC GAACGTATTC TCCATTTGCT TTTTTCTTCT
GGATGTAGCC ACCGAAAAAT TGCACTTTCT TATAACAAGT TAAATAAAAA CGATGATAAA
GAGATCAATA ATATTATCGT TACTTTGAAT TCACAACGAG CGTTATCGGC CAAAGGCAAC
GCAATGTTGT TAGCCCATCG TCATTTTGAT AAAGCGTTAC GAGAAGACGT CGCAGGATTA
TGGCTACAAG AAAAGCGACA TCAGCTTCGT TCAGGTTTAA GACTTCTTTC TCTTATCGGC
GTAATAACTC CCCTACTTGG TCTACTTGGA ACCGTTCTTG GACTTATTGA TATGTTTAAA
GAAGTAGCGG CAACGACGGG ATCCATCACT CCTAATATTC TTGCTGATGG GTTGGGCTTT
GCAATGAGAA CAACCGCTAT AGGACTCATC ATTGCAGTGC CTGCTATTTC AGGTTCACAA
CTTCTTGGAC TATGGGCAGA TAACATTCTA TCTAAACTAG AGTATTCATT AAATGTCACA
AATCTGTGGA TTGAGGGGGT GGCACCCATG AAAAATAAAA ATGAACAAGA GGCATCATTA
CGTTCAATAG AGGCTATCTA A
|
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| Protein sequence | MTGFINLYSQ LGMMALPLFI CSVLTLILLA ERILHLLFSS GCSHRKIALS YNKLNKNDDK
EINNIIVTLN SQRALSAKGN AMLLAHRHFD KALREDVAGL WLQEKRHQLR SGLRLLSLIG
VITPLLGLLG TVLGLIDMFK EVAATTGSIT PNILADGLGF AMRTTAIGLI IAVPAISGSQ
LLGLWADNIL SKLEYSLNVT NLWIEGVAPM KNKNEQEASL RSIEAI
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