| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1587 |
|---|
| Symbol | |
|---|
| ID | 6987214 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 1697451 |
|---|
| End bp | 1698671 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 643379919 |
|---|
| Product | sodium-dependent nucleoside transporter |
|---|
| Protein accession | YP_002263019 |
|---|
| Protein GI | 209695090 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1972] Nucleoside permease |
|---|
| TIGRFAM ID | [TIGR00804] nucleoside transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0436928 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGACTTTC TGGTCAGTAT TTTAGGCATT ATTAGCCTTT TTACGGTTGC ATTTCTTTTT
TCTGAAAATC GACAAGCGAT TAAGTGGCGC ACAGTCTTAG GTGCTTTCTT TATTCAAATC
TTGTTTGCCG GTTTCATTCT TTATGTTCCT ATCGGTCGCA CCATTTTAAA CGGCATATCT
ACTGCAGTTT CAGATATCAT TGCTTATGGC CGCGTTGGAA CTGAATTCTT ATTTGGTGAC
TTAGCACAAT ATAAATTAGG TTTTATTTTT GCGGTTAACG TTTTACCAAC GATTGTTTTT
TTCTCTGCGT TAATTTCTGT GTTGTACTAC CTTGGTATCA TGGGATGGAT AATTAAAACC
ATCGGTGGCG GGTTACATCG CTTTCTTGGA ACCACACGTA CAGAATCAAT GTCAGCTACC
GCAAATATCT TTGTTGGCTC TGTTGAAGCG CCTTTAGTTG TACGCCCTTT CCTTGCAAAA
ATGTCGCGTT CTGAATTATT TGCTGTAATG GTCGGTGGTC TCGCCTCTGT CGCTGGTGGC
ACAATGGTTG GTTACGCAGG TTTAGGCGTT GAGTTGCGCT ATTTAATTGC AGCGAGCTTT
ATGTCAGCAC CCGCTGGTTT AATGATGGCA AAATTAATTG TTCCTCAAAC TGAAGAGATT
GATGAGTCTA CGCAGTACGA AGAAGAAACC CCTGATGATG CACCAGTAAA TATCATTGAT
GCCGCCTCTC AGGGCGCGTT AAATGGATTA CAAATCGTAT TTGCTGTTGG TGCCAGTCTA
TTGGCTATTA TTAGCCTTAT CGCTCTATTG AACGGTGGAT TACATAAGAT TGGGATACTG
ATTGGATTTG ACCATTTAAG CTTAGATCTT ATCTTTGGCT ATTTGTTTGC CCCTGTTGCT
TGGTTAATTG GTGTTCCTTG GTCTGAATCC ATGGTGGCTG CAAGTTTAAT CGGTAAAAAG
ATTGCCATTA ATGAATTTGT TGCCTTTGCG GATTTAATGA CAGTCAAAGA TCAATTAAGT
GAACATTCGC AAGCTATCGT AACGTTCGCT CTATGTGGTT TTGCTAACTT AACGTCTATT
GCGATGTTAA TGGGAGGATT AGGCGGTATT GTTCCAAGCC GTCGCCCAGA TATTGCACGG
TTAGGCATGA AAGCTATTTT TGCAGCAACA TTAGCAAACT TAATGAGTGC CACAGTTGCA
GGCATCTTCT TGTCTTTCTA A
|
|---|
| Protein sequence | MDFLVSILGI ISLFTVAFLF SENRQAIKWR TVLGAFFIQI LFAGFILYVP IGRTILNGIS
TAVSDIIAYG RVGTEFLFGD LAQYKLGFIF AVNVLPTIVF FSALISVLYY LGIMGWIIKT
IGGGLHRFLG TTRTESMSAT ANIFVGSVEA PLVVRPFLAK MSRSELFAVM VGGLASVAGG
TMVGYAGLGV ELRYLIAASF MSAPAGLMMA KLIVPQTEEI DESTQYEEET PDDAPVNIID
AASQGALNGL QIVFAVGASL LAIISLIALL NGGLHKIGIL IGFDHLSLDL IFGYLFAPVA
WLIGVPWSES MVAASLIGKK IAINEFVAFA DLMTVKDQLS EHSQAIVTFA LCGFANLTSI
AMLMGGLGGI VPSRRPDIAR LGMKAIFAAT LANLMSATVA GIFLSF
|
|---|
| |