| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1583 |
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| Symbol | potD |
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| ID | 6988996 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 1692980 |
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| End bp | 1694068 |
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| Gene Length | 1089 bp |
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| Protein Length | 362 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 643379915 |
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| Product | spermidine/putrescine-binding periplasmic protein precursor (SPBP) |
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| Protein accession | YP_002263015 |
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| Protein GI | 209695086 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0473653 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCCTTTTG TTCGACATGT CTTCTTTTTT ATCACTCTAA TGGAGAGTCA ATCAATGAAC
AAAATGGCTG CGTTTTTTAC TGGAACCGCC TGCGCTTTAG CAATAACAAT GAATGTTGCA
CACGCAAAAG AAAATGATGA ATTGGTATTC ATGAACTGGG GACCATACAT CAACAGTAAT
ATTATCGAAG AATTTACTAA AGAGACTGGA ATTAAGGTGA TCTATTCTAC CTACGAGTCT
AACGAAACCT TATATGCAAA AATGAAAGCG CATAACAAAG GTTATGATTT AGTGGTTCCA
TCAACGTACT TTGTCGCAAA GATGCGTGAT GAAAAAATGC TTCAACCTAT TGATAAATCA
AAAATATCAA ATTTTGATGG TTTAGATACT AACTATTTAA ATAAACCTTT TGACCCTCAA
AACGAATACT CAATCCCACA CGTAGTCGCC ATTACAGGTT TAGCGGTCAA TACTGACATG
TATGATCCCG CTGACTTTAA TAGCTGGGCT GATTTATGGA ACCCAGAATT TGAAGGCCAA
TTAATGTTAA TGGATGATAC TCGTGAAGTA TTCCATATTG CATTACGTAA ATTAGGTTAC
TCAGGTAACT CTACCAATCC TAAAGAAATT GATGAAGCCT ACGCTGAGTT GCAAAAACTA
ATGCCAAATG TATTAGTCTT TAATTCAGAT AACCCAGCCG CTCCCTATTT AGCAGGAGAA
GTTGGCCTTG GTATGCTTTG GAATGGTTCT GCCGCCGCAG CACAAGCTGA AGGATTACCA
ATTAAACTGA TCTTCCCTAA AGAAGGCGGT ATTGGTTGGG TAGACAATTT TGCAATCCCT
GCTGGCGCAA AAAATGTAGA AGCATCTCAT AAAATGATAA ACTTCTTACT TCGTCCAGAC
ATTGCTGCCA GAATATCCAC GGATACTGGT TACCTAACAG CTGTTCAAGT TTCTAATGAC
AAATTCAAAG ATGTTGCCCC TCTATTTCCA TCTCAAGCAG ATCTAGATCG CGTCGAGTGG
CAATCAGCCG TGGGTAATAT GACGGTAAAA TACGAAGAGT ATTTTTTAAA ACTGAAAGCC
GGACAGTAG
|
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| Protein sequence | MPFVRHVFFF ITLMESQSMN KMAAFFTGTA CALAITMNVA HAKENDELVF MNWGPYINSN
IIEEFTKETG IKVIYSTYES NETLYAKMKA HNKGYDLVVP STYFVAKMRD EKMLQPIDKS
KISNFDGLDT NYLNKPFDPQ NEYSIPHVVA ITGLAVNTDM YDPADFNSWA DLWNPEFEGQ
LMLMDDTREV FHIALRKLGY SGNSTNPKEI DEAYAELQKL MPNVLVFNSD NPAAPYLAGE
VGLGMLWNGS AAAAQAEGLP IKLIFPKEGG IGWVDNFAIP AGAKNVEASH KMINFLLRPD
IAARISTDTG YLTAVQVSND KFKDVAPLFP SQADLDRVEW QSAVGNMTVK YEEYFLKLKA
GQ
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