Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I1370 |
Symbol | rbsC |
ID | 6989068 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 1491115 |
End bp | 1492086 |
Gene Length | 972 bp |
Protein Length | 323 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 643379726 |
Product | ribose ABC transporter permease protein |
Protein accession | YP_002262825 |
Protein GI | 209694897 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.512196 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACTCCAT CTGAATCGCA AAAAAAGAAA GGCGGCATGT TCTCAAAAGA ATGGCTGATT GAGCAAAAAT CGTTAATCGC ACTATTGCTA CTCATTGTCG TGGTTTCTTT TTTAAACGAC AACTTTTTTA CTGTCGACAA TATTCTAAAT ATCTTACGTC AAACCTCGGT AAACGCGATC ATCGCAGTTG GTATGACATT AGTTATTTTG ACCGCTGGCA TTGATTTGAG TGTTGGCTCA GTATTGGCGC TTTGTGGTGC CTTTGCCGCT ACGATGATTG GCCTTGAGAT CCACCCAATC ATTGCGGTTC CGACCTCTTT ACTTGCAGGT GCTATTCTTG GTGCGATTAG CGGAATTATC ATTGCCAAAG GTAAAGTTCA AGCCTTTATC GCAACGCTGG TAACGATGAC GTTGCTTCGT GGTGTAACCA TGGTTTACAC AGAAGGCCGC CCTATCTCTA CTGGCTTTAC TGATGTTGCT GATAGCTTTT CATGGTTCGG TACGGGTTAT GCACTTGGTA TCCCAGTTCC AATCTGGTTA ATGGTTATCG TGTTCGCATC GGTATGGTAC TTATTAAATC ACACACGCTT TGGTCGCTAT GTTTACGCGC TAGGTGGCAA TGAATCGGCA ACACGTTTAT CGGGCATCAA TGTTGATCGC GTTAAGATCG GTGTTTATGC TATCTGTGGT CTACTTGCTG CTTTGGCTGG CTTAATCGTA ACGTCTCGTC TTTCTTCTGC TCAACCAACC GCGGGTATGG GTTATGAGTT AGATGCTATC GCTGCGGTTG TTCTTGGTGG AACAAGCCTT GCTGGTGGTA AAGGTCGTAT TATGGGTACG CTTGTTGGTG CTTTGATTAT CGGCTTCTTG AACAACGCAC TTAACTTATT AGATGTATCG TCTTACTACC AAATGATCGC AAAAGCCGTG GTTATCTTAC TGGCCGTATT AGTCGATAAT AAAAACAAAT AA
|
Protein sequence | MTPSESQKKK GGMFSKEWLI EQKSLIALLL LIVVVSFLND NFFTVDNILN ILRQTSVNAI IAVGMTLVIL TAGIDLSVGS VLALCGAFAA TMIGLEIHPI IAVPTSLLAG AILGAISGII IAKGKVQAFI ATLVTMTLLR GVTMVYTEGR PISTGFTDVA DSFSWFGTGY ALGIPVPIWL MVIVFASVWY LLNHTRFGRY VYALGGNESA TRLSGINVDR VKIGVYAICG LLAALAGLIV TSRLSSAQPT AGMGYELDAI AAVVLGGTSL AGGKGRIMGT LVGALIIGFL NNALNLLDVS SYYQMIAKAV VILLAVLVDN KNK
|
| |