Gene VSAL_I1282 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_I1282 
Symbol 
ID6986962 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011312 
Strand
Start bp1392050 
End bp1393654 
Gene Length1605 bp 
Protein Length534 aa 
Translation table11 
GC content43% 
IMG OID643379646 
Producttransporter, BCCT family 
Protein accessionYP_002262745 
Protein GI209694817 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1292] Choline-glycine betaine transporter 
TIGRFAM ID[TIGR00842] choline/carnitine/betaine transport 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGTTTTA AATCAGAAAA GTACAGTATT GAATCGACGG ATTATGAAGT CGGTCAAGAT 
AACATCAGTA AATGGGGCAT GGATGTCCAC AACACCGTTT TTGTAGCCTC AGTCGGCTTA
TCTCTTCTCT TCATTATCAC TCTTCTCGCA TTACCTCCCG CAGACGCAAA AGCAGCCATT
GATTCACTTA AAGGTTCTGT GTTGTCAAAT TTTGACTTCC TCTTTATGTG GGGCGCTAAC
ATCTTATTAA TCTTTGCCAT TATTTTAGCA TTTTCGCCTT TGGGTAAAAT TCGCTTAGGT
GGTGACGACG CGAAACCAGA TTATTCTAAA GCCTCTTGGA TCTCGATGTT ATTCGCTGCC
GGTATGGGTA TTGGGCTTAT CTTCTGGGGT GTTGCAGAGC CAACCGCGTT CTTTACCAAC
TGGTTTGGAA CCCCGCTTAA TGTAGAACCT TTTACAGAAG CAGGGCGTGA ACTTGCTCTG
GGGGCAACGG TCTTCCACTG GGGCTTACAC GCATGGGCTA TCTATGGCAT GACAGCACTT
TGTCTTGCTT ATTTTGTTTA CAATAAAGGG TTGCCACTTT CAATGCGCTC GGTATTTTAC
CCATTATTGG GTGATCGAGT TTGGGGGCGA ACAGGTGATG TGATTGATAT CTTAACCGTA
TTGGTTACCT TGTTTGGCCT AGCGACTTCC CTTGGTTTAG GAGGCACACA AGCGGCTAGT
GGTATCAGCC ATGTTTTCGG AATAGACAAT AATATCTATC TTCAACAAGC CGTTATCGTA
TTGATCATGG GTCTGGCGAT CATTTCTGTT CTACGTGGTA TGGATGGTGG CGTTAAGTTT
CTTAGTAACC TGAATATGGT TATTGCGTTT GTCTTCCTTG GCCTTATTGC TGTTTTGAAT
TTCACTACCG TATTGGATTC TTTGGTTACG GCTCTAACGG GTTATGTGAA AAATATTATT
CCATTGAGTC AAACCTCGGG TCGTGAAGAT ACAGCGTGGT TGCACGGTTG GACTGTGTTC
TATTGGGCGT GGTGGGTTGC GTATGCACCT TTCTTTGGTA TGTTTGTTGC TCGTATCTCT
AGAGGACGTA CCGTTCGTGA ATTCCTTCTT TGCGTAATGC TTATTCCTAC AATGGTAACC
ACGGCGTGGA TGTCTATCTT CGGCGGTGTT GCGATTCAAC AAGTAATAGA TAAAGTTGGA
TTATTGGGCG CTCAACAAGG TATTAGCGAT GTTTCTCTAA GCTTGTTCCA TATGTTAGAC
GCTTACCCAT TTGGGGATAT TCTATCCTTT ATTGCCGTGG CACTGATTAT CGTTTTCTTT
GTGACAACGT TGGACTCAGG CTCTATCGTT ATTGATGGCA TGACCGCCGG TGGTAAGTTA
GAAGTACCCG TTAAACAGAA AGTAGTTTGG GCAGTTATCT CCGGTGCTAT CGCAATGGTT
ATGTTGTGGA TTGGTGGTAC TCAATCTATT GAATCTCTGC AATCAATTAC CATTATTGCT
GCAATGCCGT TTACAATTAT TCTCTTGCTA GGCAGTGTGA GTCTACTTAA AGGACTATTG
ACGGAAGTTG ATAAACCAAA GGTAGCGACT AAACGAGTTA ACTAG
 
Protein sequence
MGFKSEKYSI ESTDYEVGQD NISKWGMDVH NTVFVASVGL SLLFIITLLA LPPADAKAAI 
DSLKGSVLSN FDFLFMWGAN ILLIFAIILA FSPLGKIRLG GDDAKPDYSK ASWISMLFAA
GMGIGLIFWG VAEPTAFFTN WFGTPLNVEP FTEAGRELAL GATVFHWGLH AWAIYGMTAL
CLAYFVYNKG LPLSMRSVFY PLLGDRVWGR TGDVIDILTV LVTLFGLATS LGLGGTQAAS
GISHVFGIDN NIYLQQAVIV LIMGLAIISV LRGMDGGVKF LSNLNMVIAF VFLGLIAVLN
FTTVLDSLVT ALTGYVKNII PLSQTSGRED TAWLHGWTVF YWAWWVAYAP FFGMFVARIS
RGRTVREFLL CVMLIPTMVT TAWMSIFGGV AIQQVIDKVG LLGAQQGISD VSLSLFHMLD
AYPFGDILSF IAVALIIVFF VTTLDSGSIV IDGMTAGGKL EVPVKQKVVW AVISGAIAMV
MLWIGGTQSI ESLQSITIIA AMPFTIILLL GSVSLLKGLL TEVDKPKVAT KRVN