Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I1282 |
Symbol | |
ID | 6986962 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 1392050 |
End bp | 1393654 |
Gene Length | 1605 bp |
Protein Length | 534 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 643379646 |
Product | transporter, BCCT family |
Protein accession | YP_002262745 |
Protein GI | 209694817 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1292] Choline-glycine betaine transporter |
TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGGTTTTA AATCAGAAAA GTACAGTATT GAATCGACGG ATTATGAAGT CGGTCAAGAT AACATCAGTA AATGGGGCAT GGATGTCCAC AACACCGTTT TTGTAGCCTC AGTCGGCTTA TCTCTTCTCT TCATTATCAC TCTTCTCGCA TTACCTCCCG CAGACGCAAA AGCAGCCATT GATTCACTTA AAGGTTCTGT GTTGTCAAAT TTTGACTTCC TCTTTATGTG GGGCGCTAAC ATCTTATTAA TCTTTGCCAT TATTTTAGCA TTTTCGCCTT TGGGTAAAAT TCGCTTAGGT GGTGACGACG CGAAACCAGA TTATTCTAAA GCCTCTTGGA TCTCGATGTT ATTCGCTGCC GGTATGGGTA TTGGGCTTAT CTTCTGGGGT GTTGCAGAGC CAACCGCGTT CTTTACCAAC TGGTTTGGAA CCCCGCTTAA TGTAGAACCT TTTACAGAAG CAGGGCGTGA ACTTGCTCTG GGGGCAACGG TCTTCCACTG GGGCTTACAC GCATGGGCTA TCTATGGCAT GACAGCACTT TGTCTTGCTT ATTTTGTTTA CAATAAAGGG TTGCCACTTT CAATGCGCTC GGTATTTTAC CCATTATTGG GTGATCGAGT TTGGGGGCGA ACAGGTGATG TGATTGATAT CTTAACCGTA TTGGTTACCT TGTTTGGCCT AGCGACTTCC CTTGGTTTAG GAGGCACACA AGCGGCTAGT GGTATCAGCC ATGTTTTCGG AATAGACAAT AATATCTATC TTCAACAAGC CGTTATCGTA TTGATCATGG GTCTGGCGAT CATTTCTGTT CTACGTGGTA TGGATGGTGG CGTTAAGTTT CTTAGTAACC TGAATATGGT TATTGCGTTT GTCTTCCTTG GCCTTATTGC TGTTTTGAAT TTCACTACCG TATTGGATTC TTTGGTTACG GCTCTAACGG GTTATGTGAA AAATATTATT CCATTGAGTC AAACCTCGGG TCGTGAAGAT ACAGCGTGGT TGCACGGTTG GACTGTGTTC TATTGGGCGT GGTGGGTTGC GTATGCACCT TTCTTTGGTA TGTTTGTTGC TCGTATCTCT AGAGGACGTA CCGTTCGTGA ATTCCTTCTT TGCGTAATGC TTATTCCTAC AATGGTAACC ACGGCGTGGA TGTCTATCTT CGGCGGTGTT GCGATTCAAC AAGTAATAGA TAAAGTTGGA TTATTGGGCG CTCAACAAGG TATTAGCGAT GTTTCTCTAA GCTTGTTCCA TATGTTAGAC GCTTACCCAT TTGGGGATAT TCTATCCTTT ATTGCCGTGG CACTGATTAT CGTTTTCTTT GTGACAACGT TGGACTCAGG CTCTATCGTT ATTGATGGCA TGACCGCCGG TGGTAAGTTA GAAGTACCCG TTAAACAGAA AGTAGTTTGG GCAGTTATCT CCGGTGCTAT CGCAATGGTT ATGTTGTGGA TTGGTGGTAC TCAATCTATT GAATCTCTGC AATCAATTAC CATTATTGCT GCAATGCCGT TTACAATTAT TCTCTTGCTA GGCAGTGTGA GTCTACTTAA AGGACTATTG ACGGAAGTTG ATAAACCAAA GGTAGCGACT AAACGAGTTA ACTAG
|
Protein sequence | MGFKSEKYSI ESTDYEVGQD NISKWGMDVH NTVFVASVGL SLLFIITLLA LPPADAKAAI DSLKGSVLSN FDFLFMWGAN ILLIFAIILA FSPLGKIRLG GDDAKPDYSK ASWISMLFAA GMGIGLIFWG VAEPTAFFTN WFGTPLNVEP FTEAGRELAL GATVFHWGLH AWAIYGMTAL CLAYFVYNKG LPLSMRSVFY PLLGDRVWGR TGDVIDILTV LVTLFGLATS LGLGGTQAAS GISHVFGIDN NIYLQQAVIV LIMGLAIISV LRGMDGGVKF LSNLNMVIAF VFLGLIAVLN FTTVLDSLVT ALTGYVKNII PLSQTSGRED TAWLHGWTVF YWAWWVAYAP FFGMFVARIS RGRTVREFLL CVMLIPTMVT TAWMSIFGGV AIQQVIDKVG LLGAQQGISD VSLSLFHMLD AYPFGDILSF IAVALIIVFF VTTLDSGSIV IDGMTAGGKL EVPVKQKVVW AVISGAIAMV MLWIGGTQSI ESLQSITIIA AMPFTIILLL GSVSLLKGLL TEVDKPKVAT KRVN
|
| |