Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I1229 |
Symbol | |
ID | 6986915 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 1338909 |
End bp | 1339841 |
Gene Length | 933 bp |
Protein Length | 310 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 643379602 |
Product | putative immunogenic protein precursor |
Protein accession | YP_002262701 |
Protein GI | 209694773 |
COG category | [R] General function prediction only |
COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.144519 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTGTGT TTAAACGTAA CTTACTATTG GCTTTATTAT TTATATTGCC ATCAGCAGTG AACGCTGAGA ACTATTCAAT TGGTACGGGT GGGCAGAGTG GGATCTATTA TCCGTTTGGT GGTGCGTTAG CAAAAGTGTG GTCAGAACAT GTACCCGATG TGAATGCGAA AGCTGAAGTG ACAGCCGCTT CAGTAGAGAA CACAATCAAA GTGGTACGTG GCGATATGAT CGCAGGTATC GCAATGGGGA ATGTCGTGCT TGATGCCTAC AATGGCAAAG GTAAATTTCC GAAAAAAATG CCAGTAAACA CCCTTTTTGC ACTGTACCCA AACCTAGTGC ATACACTAAC TCTTGAAAAA TCAGGCATTA CGTCATTATC ACAATTAAAA GGCAAGCGAG TGTCTTTAGG GGCTCCTGCC AGTGGTACGG CTGTGACGTC TGCTGCTTTG CTTGAATCTT TAGGTATTGA TGTGAAAAAA GACATTGATG CCGTGTATTT AAATTATTCT GAAACGACTA ATGCGCTTGC GAATGGTCAA ATTGATGCTG GCTTTATTGT GGGTGGTCAA GGCGTAGGGG CGGTAACTCA AATCGCGTTA ACGCATAAAA TTAAAGTGCT TTCAATTACA CCAGAAGAAA GTGCAATGTT CATGAAAAAA TACCCTGCAT ACAGCACGTA CGATATGCCT GCTGGTGTAT ACAACAATGT AGGTGAAGTA TCGACATTAA GTGTATGGAA CGTATTGGTT GTAAACGCAA AAATGAGTGA TGACATGGCA TACAACTTAA CCAAAGCCGC TTTTGAAAAT ATCGGCGATG TTCGTAAAGT GGTTAAAATG GCAGAGATGA CAACACCTGA AAATGCAGAT CGCTTACAAG GTGTCCCTCT TCATCCTGGT GCTCAAAAAT ATCTTGATTC AATCATAAAA TAA
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Protein sequence | MIVFKRNLLL ALLFILPSAV NAENYSIGTG GQSGIYYPFG GALAKVWSEH VPDVNAKAEV TAASVENTIK VVRGDMIAGI AMGNVVLDAY NGKGKFPKKM PVNTLFALYP NLVHTLTLEK SGITSLSQLK GKRVSLGAPA SGTAVTSAAL LESLGIDVKK DIDAVYLNYS ETTNALANGQ IDAGFIVGGQ GVGAVTQIAL THKIKVLSIT PEESAMFMKK YPAYSTYDMP AGVYNNVGEV STLSVWNVLV VNAKMSDDMA YNLTKAAFEN IGDVRKVVKM AEMTTPENAD RLQGVPLHPG AQKYLDSIIK
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