| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1227 |
|---|
| Symbol | dcuB |
|---|
| ID | 6986914 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 1335288 |
|---|
| End bp | 1336601 |
|---|
| Gene Length | 1314 bp |
|---|
| Protein Length | 437 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 643379600 |
|---|
| Product | anaerobic C4-dicarboxylate transporter |
|---|
| Protein accession | YP_002262699 |
|---|
| Protein GI | 209694771 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2704] Anaerobic C4-dicarboxylate transporter |
|---|
| TIGRFAM ID | [TIGR00770] anaerobic c4-dicarboxylate membrane transporter family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0182987 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTTTTAA TTGAGTTTTT AATCGTTCTA GTTTGTATTT TAATTGGTGC TCGTATTGGC
GGCATCGGCT TAGGTGTCAT GGGAGGTATT GGTTTAGCAA TACTGAGTTT TGTTTTTGGA
TTACAACCAA CAAGTCCACC TATTGACGTA ATGTTAATGA TCATGGCGGT TGTTGCAGCT
GCTGCAGCGA TGCAAGCGGC GGGCGGTCTT GAATATTTAA TTAAGATTGC ATCACGTATT
TTACGTAAAA ATCCACGTCA CATTACCTTT ATTGCTCCTT TAGTGACGTA CATGTTTACT
TTCTTAGCAG GTACAGGGCA CGTTGCTTAT TCTGTATTGC CTGTTATTTC AGAAGTGAGC
CGTCGTAGTG GTATTCGCCC AGAACGTCCG CTTGGTATGG CGGTTATCGC ATCACAATTT
GCTATTGTAG CAAGTCCGAT CGCGGCAGCG GTTGTTGCTT TGGTTGCTTT TTTAGAGCCG
CAGGGAATTA CTCTTGCTGA TGTACTAATG ATTACGATCC CAGGAACTTT CTGTGGTTTA
GCACTGGCTT GCGTCATCGT AAACAAGCTA GGTAAGGATC TAAAAGACGA TCCTGAATAT
CAGCGTCGTA TGCAAGATCC TGTCTTTCGT AAGGAAATGG AAGCAGAAGT TAAAGTTGAA
GAGATTGAGA TTAAACCGGG CGCTAAAAAA GCCGTGGGTT TATTCTTATT TGGCGCAATT
GTGGTTGTTA TTATGGGCGC GTTCCCATCA TTACGTCCTA ACTTTAATGG CTCACCTATG
GGAATGGCAC ATACGATTGA GATCGTCATG TTAGCCATGG CAGCGTTGAT TATTTTACTT
TGTAAGCCTG ATGGTAATGA AATAACCCAA GGTTCGGTAT TCCATGCGGG TATGCGTGCA
ATTGTGGCTA TCTTTGGTAT TGCATGGTTG GGTGATACGT TTATTGCGGG TCACGACATT
ATGGTAAAAG AAGCGGTTTC AGGGTTAGTT GAAGTAGCGC CATGGACATT TGCTTTTGCA
TTATTTGGCT TATCAGTAAT GGTAAACAGC CAAGGGGCAA CCACTGCGGT ACTTGTGCCT
GTTGCGATTA CTTTGGGTCT TCCACCTGAA GTGATTATAG CTACTTTTGT TGCTGTAAAT
GGTTATTTCT TTATTCCTAA CTACGGTCCA ATTATCGCTT CTATTGATTT TGACCGAACA
GGAACAACCA AGATTGGTAA GTATATCTTT AACCACAGTT TCATGATCCC TGGTTTATTG
AGTATGGTTT TTAGTATCAT ATTTGGTTTT GTTTTTGCGA GTATGGTTCT ATAG
|
|---|
| Protein sequence | MFLIEFLIVL VCILIGARIG GIGLGVMGGI GLAILSFVFG LQPTSPPIDV MLMIMAVVAA
AAAMQAAGGL EYLIKIASRI LRKNPRHITF IAPLVTYMFT FLAGTGHVAY SVLPVISEVS
RRSGIRPERP LGMAVIASQF AIVASPIAAA VVALVAFLEP QGITLADVLM ITIPGTFCGL
ALACVIVNKL GKDLKDDPEY QRRMQDPVFR KEMEAEVKVE EIEIKPGAKK AVGLFLFGAI
VVVIMGAFPS LRPNFNGSPM GMAHTIEIVM LAMAALIILL CKPDGNEITQ GSVFHAGMRA
IVAIFGIAWL GDTFIAGHDI MVKEAVSGLV EVAPWTFAFA LFGLSVMVNS QGATTAVLVP
VAITLGLPPE VIIATFVAVN GYFFIPNYGP IIASIDFDRT GTTKIGKYIF NHSFMIPGLL
SMVFSIIFGF VFASMVL
|
|---|
| |