Gene VSAL_I1202 details

Gene Information

• Locus tag: VSAL_I1202
• Symbol: hcp
• ID: 6986891
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 1311319
• End bp: 1311840
• Gene Length: 522 bp
• Protein Length: 173 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 643379577
• Product: secreted protein Hcp-1 (haemolysin co-regulated protein)
• Protein accession: YP_002262676
• Protein GI: 209694748
• COG category: [S] Function unknown
• COG ID: [COG3157] Hemolysin-coregulated protein (uncharacterized)
• TIGRFAM ID: [TIGR03344] type VI secretion system effector, Hcp1 family

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAACTC CAGCGTATAT GTCAATAAAA GGCGAAGTTC AGGGTGACAT CACTAAAGAT 
GCGTATTCAG CAGATTCAAT AGGGAATACG TGGCAAGAAG CACACATTGA TGAGTTTCTT 
GTTCAAGAAC TTGATCATGT ATTAACGGTT CCACGTGATC CTCAAAGTGG CCAGCCAACA 
GGTCAACGAG TTCACCGTCC TGTGATTGTA ACTAAACAAC AAGACCGCTG TTCTCCATTG 
TTGTTTAACT CATTAGTTTC AGGTGAAAAA TTACCAGAGT GCAGTATCAA CTTCTACCGT 
ACGTCTATTT CTGGTAAGCA AGAGCACTAT TACACAATCA AATTGATTGA TGCACTGCTT 
GTAGATATGC AAACTCGCAT GGCTCATTGT CAAGATGCTG CAACGTCAGA TCGTGTAACA 
GAAGAAGTGC TTAAGTTTAC TTACCGTGCA ATTGAAGTGA CTCACGAAAC GTGTGGCACG 
GCAGGTAATG ATGATTGGCG CGCACCACGC GAAGCGGGTT AA 

 

Protein sequence

MPTPAYMSIK GEVQGDITKD AYSADSIGNT WQEAHIDEFL VQELDHVLTV PRDPQSGQPT 
GQRVHRPVIV TKQQDRCSPL LFNSLVSGEK LPECSINFYR TSISGKQEHY YTIKLIDALL 
VDMQTRMAHC QDAATSDRVT EEVLKFTYRA IEVTHETCGT AGNDDWRAPR EAG