Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I1122 |
Symbol | vasS |
ID | 6989372 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 1224260 |
End bp | 1224685 |
Gene Length | 426 bp |
Protein Length | 141 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 643379502 |
Product | putative type VI secretion protein VasS |
Protein accession | YP_002262601 |
Protein GI | 209694673 |
COG category | [S] Function unknown |
COG ID | [COG3518] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03357] type VI secretion system lysozyme-related protein |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.111003 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTTAAAC AACGATTATT TGAACGTTTA TTGGCCGGGA ATGTATCGAT GAATACGTCG GTATCAGTAA TGATATTAAC GGAGTCCATT AAAAATCACG TCACTCAATT ACTCTCAACA AGGCAAGGTG ACGCAAAAAT TCGTCCCGAT TTAGGTTTAC CAGATTTGAA TATCTCACAC ATGACGCCTC ATGATGCGAT TCTGCACATT AAAAGAGAGG TAGAACGTGT CATCTCACAG TACGAAACTC GAATCATCAA TACCAAAGTT AATTATTTAG GTAATATAAA CAGCCCTATT CATCTTTATT TTGAAATCAA TGGTGATATT TTATTAAATA ACCAACTAAC GCCTATTTCT TTTAATACTT ACGCTCAAAA AGTTAACACT AAGCCTTATA ACTATGAAAT TCAAGGCCTG GCATGA
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Protein sequence | MLKQRLFERL LAGNVSMNTS VSVMILTESI KNHVTQLLST RQGDAKIRPD LGLPDLNISH MTPHDAILHI KREVERVISQ YETRIINTKV NYLGNINSPI HLYFEINGDI LLNNQLTPIS FNTYAQKVNT KPYNYEIQGL A
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