Gene VSAL_I1117 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_I1117 
SymbolvasC 
ID6989377 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011312 
Strand
Start bp1215928 
End bp1217289 
Gene Length1362 bp 
Protein Length453 aa 
Translation table11 
GC content39% 
IMG OID643379498 
Productputative type VI secretion protein VasC 
Protein accessionYP_002262597 
Protein GI209694669 
COG category[T] Signal transduction mechanisms 
COG ID[COG3456] Uncharacterized conserved protein, contains FHA domain 
TIGRFAM ID[TIGR03354] type VI secretion system FHA domain protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGATTA CCGACCTGTT GGCAATCCGG CACCACAAGA ACAAACAACT CTCGTTTCAG 
AGGAGAAATA AAATGGAACT CGCCTTTGAT ATTATTCAAT CACAAGATTT ACCTATCGAT
ACCCTACCTA CTTTTACCTT TAAAAAGGCA GGAGGCACCA TTGGCCGTAG TCCCAATTCA
GATTGGTATA TCGCAGACAA TAAACGCCAA CTGTCGAATG TTCACGTATC CATAAGTTAT
GAAAATGATC AATTTTTCAT TTCAGACAGC AGCACAAACG GAACTTATCT TGATGGGCAA
GAGGCTTCAC TAAACAACGG GGAATTGCAC CCTGTTTCTC ATGGTGATAT TTACGAATTA
GGTTTAATAA AAATTCGAGC TCGCTTGCTA CAAGACCCAG AAAATTATAT TTCACCAAGC
CAAAACACGC TTGATTCTTC CTCAAATGAT GAGCAATCTG TCTTTAATAT GATCCCTGAC
GACAGTTTTT TAAGCAATGC GCCTATCGAA GAATTACTTA ACACCGATGA AGACATTATT
TTAAAACAAA TCGAAGATGC GGTACCCGCT CAATCTCAAA TGGACGATAC CTTACTTAAA
GAACAATTCA TTTCTCCCGT TTTATATGAT GACTTTGATG AAGAAAATGA TGCGGCCTCT
TATACCGGAG AAGAACAGAT AATAGAAGAC CCCATTTTTT CTACTCAAAC TAGATCTACG
GATAACCCAA TACCAGAATC TAAAGAAAAA ACGATAGAAA AAGAGAATAC TGCCGAACAA
TCTCAAGCCT ATTTAGCCGC GTTATCAAAA GGCCTAGGGA TTGAATTAAC CAATCTAGAA
GATCCAGAGC AAACATTATT TGATGTTGGT AGCGCATTAA GAAGTTCGAT CAATGGCATT
CAACAGCTTT TACGAACCCG AACTGAAATT AAAAATAAAC TCACCGCGAA TGCCACCACC
ATTCAGGCTC AGGGAAATAA CCCAATTAAG TTCAGCCATG ATGTCAATGA TGCCCTTAAT
GTCATTATTC ACCATAAACC CGGCTATTTA CAGGGGATTG AAGCCATAAA CCAAAGCTGT
AAAGACATAC AAGCCAACCA ACTCGCCATT CATGATGCTT GCCAACATAC CTTGGATGCA
CTCATAGAAA AGCTATCACC ACAGACATTA ACATATCGGT TTGTACAGGA TGGTATTCAA
ACAAAATTCA CAAAACCAGA CGCATTGTAC TGGCAAGCCT ATAAGAAACT GCATGAGCAA
ATAAGTCATG ATTCTGATTG GAGAAATGCC TTACTAGAGC AAGACTTTGC GAAACAATAC
GAATCTCAAC TGCAAATGTT ATCTGCCGCT TTACGCGTGT AA
 
Protein sequence
MMITDLLAIR HHKNKQLSFQ RRNKMELAFD IIQSQDLPID TLPTFTFKKA GGTIGRSPNS 
DWYIADNKRQ LSNVHVSISY ENDQFFISDS STNGTYLDGQ EASLNNGELH PVSHGDIYEL
GLIKIRARLL QDPENYISPS QNTLDSSSND EQSVFNMIPD DSFLSNAPIE ELLNTDEDII
LKQIEDAVPA QSQMDDTLLK EQFISPVLYD DFDEENDAAS YTGEEQIIED PIFSTQTRST
DNPIPESKEK TIEKENTAEQ SQAYLAALSK GLGIELTNLE DPEQTLFDVG SALRSSINGI
QQLLRTRTEI KNKLTANATT IQAQGNNPIK FSHDVNDALN VIIHHKPGYL QGIEAINQSC
KDIQANQLAI HDACQHTLDA LIEKLSPQTL TYRFVQDGIQ TKFTKPDALY WQAYKKLHEQ
ISHDSDWRNA LLEQDFAKQY ESQLQMLSAA LRV