Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I1116 |
Symbol | vasD |
ID | 6989379 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 1215406 |
End bp | 1215894 |
Gene Length | 489 bp |
Protein Length | 162 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 643379497 |
Product | putative type VI secretion protein VasD |
Protein accession | YP_002262596 |
Protein GI | 209694668 |
COG category | [S] Function unknown |
COG ID | [COG3521] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03352] type VI secretion lipoprotein, VC_A0113 family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATCGT TGTTCGCTTT ATTGACGATA TTAATGTTCA GTGGCTGTAG CAATACCCCT GAACCAACCT ACGTTGCATT AACCCTTAAT GCTTCGGCAA ATCTTAACCC TGATCATGTT GATCGTCCAT CACCACTCGT TATCAGGATC ATTGAACTGT CATCAATCAC AAGTCTTGAG AATGCCGAAT TCTTTGATTT ATACAACAAT GCAAAAGCCA ATTTAGGTCC TGATTTTATT GCAGAAGAAG AAATAATCTT ACGTCCCGGC GATAAAAAGA TCATCAAACT AAAATTAAGT GAAAAAGGAC AATACCTTGC TGTTATTGGC GCTTATCAAA ATATTGAAAG TGCCGATTGG CGTTATATTT ATACCGTTGA ACCAGAAGAA GCTCAGAAAA TAGAATTGAT AGCGACGGAT ACCTCTATTG TAAAGCTGGA GCGCGTAAAG AAAAAAAACA CAACCCCAGC TAATAACTCC CACATTTAG
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Protein sequence | MKSLFALLTI LMFSGCSNTP EPTYVALTLN ASANLNPDHV DRPSPLVIRI IELSSITSLE NAEFFDLYNN AKANLGPDFI AEEEIILRPG DKKIIKLKLS EKGQYLAVIG AYQNIESADW RYIYTVEPEE AQKIELIATD TSIVKLERVK KKNTTPANNS HI
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