| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0844 |
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| Symbol | sdhA |
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| ID | 6989229 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 938005 |
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| End bp | 939774 |
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| Gene Length | 1770 bp |
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| Protein Length | 589 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 643379248 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_002262351 |
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| Protein GI | 209694423 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTAGTGAGTA TTGCTGTTAG AGAATTTGAC GCTGTTGTAA TCGGCGCTGG TGGTGCAGGA
ATGCGAGCTG CACTACAAAT TTCAGAACAA GGCTTATCAT GTGCTTTGTT ATCAAAAGTG
TTTCCAACTC GTTCTCATAC TGTATCTGCT CAAGGTGGTA TTACCGTTGC TCTCGGTAAT
GCGCATGAAG ATCACTGGGA ACAACATATG TACGATACCG TAAAAGGTTC CGATTATATT
GGTGACCAAG ATGCAATCGA ATACATGTGT AAGAATGGCC CTGAATCAGT TATCGAATTA
GAGAAGATGG GATTGCCTTT TTCTCGTTTT GATGACGGTA CGATTTATCA GCGACCATTC
GGTGGTCAAT CTAAAAACTT CGGTGGTGAG CAAGCGGCAC GTACTGCGGC GGCAGCTGAC
CGTACTGGGC ACGCTTTGCT TCATACGTTA TACCAACAAA ATATTAAGCA CAAAACGACC
ATTTTTTCTG AGTGGTACGC GCTTGACCTT GTTAAAAATG AAGACGGTGC CATTTTAGGC
TGTACCGCGC TTTGCATGGA AACAGGGGAG ATTTGTTACT TTAAATCGAA AGCAACCATC
CTTGCTACAG GTGGCGCTGG TCGTATTTAT GCGTCAACAA CGAATGCACA CATTAATACC
GGTGATGGTG TTGGTATGGC GATTCGTGCT GGCGTTCCAA TGCAAGATAT CGAAATGTGG
CAATTCCATC CGACGGGCAT TGCCGGTGCG GGTGTTCTTG TTACTGAAGG TTGTCGTGGT
GAAGGTGGTT ATCTTCTAAA TAAAGACGGT GAGCGCTTCA TGGAGCGTTA TGCTCCAAAC
GCGAAAGATC TTGCTGGTCG TGATGTTGTT GCTCGTTCAA TGATGGTTGA AATTCGCGAA
GGTCGTGGTT GTGATGGTCC TTGGGGTCCT CACCTTAAAC TGAAGTTGGA TCATTTAGGC
AAAGAAACGC TTGAATCTCG CCTACCTGGT GTGTGTGAGC TATCTCGTAC CTTTGCTCAT
GTTGATCCAG TAAAAGAACC AATCCCAGTG ATTCCTACTT GTCATTACAT GATGGGTGGC
GTACCAACAC AAGTGTCTGG TCAAGCAATT AAGCAAGACC CAACGGGCGC AGATGTAGAA
ATTCAAGGTC TATTTGCTTG TGGTGAAATT GCGTCGGTAT CGGTCCATGG TGCAAACCGC
CTAGGTGGTA ATTCACTGCT TGATTTAGTC GTGTTTGGTC GTGCAACCGG TCTTCATTTA
GGTGAAACAC TGAAGAAACA AGCAGAAGCT AAGCCGGCTA CTGAAGCGGA TATTGAAGCG
TCTCTTGATC GTTACAATCG TTGGGAGAAC AGTACGGGTG GTGAAGACCC AGTTCAAATC
CGCAAAGACT TACAACAATG TATGCAAAAT AACTTCTCGG TATTCCGTGA AGGCGATGCA
ATGGCTAAAG GTCTTGAAGA GCTTAAAGCG ATTCGTGAGC GTTTGAAAAA TGCTTATCTT
GCCGATAAAT CAACAGAATT TAACACTCAA CGTATCGAAT GTTTAGAGTT AGAAAACTTG
ATGGAAACGG CATTTGCGAC GGCAGTTGCA GCAAACTATC GTACAGAAAG TCGTGGAGCA
CATGCTCGTT TTGACTTCCC TGATCGTGAT GATGTGAATT GGTTATGTCA TTCAGTGTAT
AACCCTGAGA CAGAATCGAT GACTAAGCGT GGTGTGAACA TGGAGCCTAT CCATCGTGAA
GCATTTCCAC CTAAAGCACG TACGTATTAA
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| Protein sequence | MVSIAVREFD AVVIGAGGAG MRAALQISEQ GLSCALLSKV FPTRSHTVSA QGGITVALGN
AHEDHWEQHM YDTVKGSDYI GDQDAIEYMC KNGPESVIEL EKMGLPFSRF DDGTIYQRPF
GGQSKNFGGE QAARTAAAAD RTGHALLHTL YQQNIKHKTT IFSEWYALDL VKNEDGAILG
CTALCMETGE ICYFKSKATI LATGGAGRIY ASTTNAHINT GDGVGMAIRA GVPMQDIEMW
QFHPTGIAGA GVLVTEGCRG EGGYLLNKDG ERFMERYAPN AKDLAGRDVV ARSMMVEIRE
GRGCDGPWGP HLKLKLDHLG KETLESRLPG VCELSRTFAH VDPVKEPIPV IPTCHYMMGG
VPTQVSGQAI KQDPTGADVE IQGLFACGEI ASVSVHGANR LGGNSLLDLV VFGRATGLHL
GETLKKQAEA KPATEADIEA SLDRYNRWEN STGGEDPVQI RKDLQQCMQN NFSVFREGDA
MAKGLEELKA IRERLKNAYL ADKSTEFNTQ RIECLELENL METAFATAVA ANYRTESRGA
HARFDFPDRD DVNWLCHSVY NPETESMTKR GVNMEPIHRE AFPPKARTY
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