| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0823 |
|---|
| Symbol | |
|---|
| ID | 6988691 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 915001 |
|---|
| End bp | 916857 |
|---|
| Gene Length | 1857 bp |
|---|
| Protein Length | 618 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 643379227 |
|---|
| Product | peptidyl-prolyl cis-trans isomerase D |
|---|
| Protein accession | YP_002262330 |
|---|
| Protein GI | 209694402 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0760] Parvulin-like peptidyl-prolyl isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0677153 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGGATC GAATTCGCGA AGGTTCAACT GGCCTCGTTG TTAAGATCAT TCTCGGTCTA
ATTATTTTCT CATTTGTGTT TGCAGGTGTA GGTAGTTATT TAGTCGGTGG TAGTCAACCT
CTAGCGGCTA AAGTCGGTGA GCGTGAAATA ACACGAAATG ATTTTGAACA AGTTTATCAA
AATGAACGCA ACCGTATGCA ATCTCAACTG GGCGAATATT TTTCGACTCT ACTTGGTGAC
CCTGCGTATG TAGAGCAATT CCGAAAGTCA GTTTTAGATC GTATGGTCAA TGATGCTTTA
CTCGATAACC AAGCTCAAGA ACTTGGTTTA CGTGTAAGTG ATGAACAAAT ACGCCAAGCA
ATTTTATCTA TGCCTCAGTT CCAAAAAGAT GGAAAGTTTG ACGAAGAAAT CTTTAATGTC
TCATTACGCC GCGCTGGTTT CACTTCAGAC AGCTTCGCTG AGTATTTACG TGGTGATCTT
GTTCGTAATC AATTAGTGTC AGCGTTAGAA TCAACGGAAT TTACGCTAAG TAATGAAGTT
AAAGCGCAAG GTGAACTTGA AGGTCAGCAA CGTGAAATTC GTACCATTAC TTTAGATACA
GCAACATTTG CTAAAAATGC AAAAGTGACT GAAGAAGAAG TAAAAGAATA CTATGATGCG
AATAAACAAC AATTTGTTCG TCCAGAACAA GTTAAAGTTT CTTATATTGA ATTATCTGGT
GAATCATTGA AGGCACAAGC GCCAATTACT GATGAAGAAA TTCAAACGTA TTACAATGAG
AATCAAGATA AGTACTCAAC GCAAGAAAAA CGTGAAGTAA GCCATATTCT TATCAAAGGT
GACGAAGCTG ACGCTCAAGC GGTTCTTGCT CGTTTAGATG CAGGTGAAGA TTTCGCTACT
GTAGCGAAAG AAGACTCGCA AGATATTCCA ACAGCAAAAG AAGGTGGTTC TTTAGGTTGG
ATTGAACGCG GTGTGATTGA TCCTGAATTT GAAGATGCCG CTTTCCAACT TGTTAATGTA
GGCGATCATT CAGGCTTAGT TAAATCTGCA TTTGGTTATC ATATTATTCA ATTAGATGCG
ATTGAAGCAC CAAAAACTAA GCCTTTGGCT AAAGTAAGTG CGGACATTAA AGCGTTTTTA
GTTGATGAGC ACGCTGCAGA TGCTTTTTAT AGCATGCAGA CAGAATTAGC AGAAAAAGCA
TTTGAATCTC CTGATTCACT AGATGATGCT GCTGAAGCCG TAAATGCAAA AGTAATTACT
TCTGATTTCT TCTCTCAAGC GGATGCACCA GCATTGCTAG CAAATAGTGA TGTGCTTCAA
GCTATTTATA GCGCAGAAGT AAAAGAAGAT GGCTTAAATT CTGATGTTAT TGAGATTGCT
CCTGAACACG TAGTTGTTGT TCGTGTTGAA GAGTCTCGTG ATGAAATGGT ATTACCGTTA
GAAGAGGTTA AAGCGTCTGT TATTACTCGC TTATCTCAAG CTAAAGGTGA GCAAAAAGCA
TTAGAGTTAG CGAAGAATAT AATTACGGCG TTAAATAAAG ACGATGATGC ATATTTATCA
GAGCAAGGCT TAGTATTTAC AGAAGCACGA ATGATTACTC GTGCAGATGA ACTTGCTAAC
GATGTTTACC GTTTACAAAA ACCGACTGCT GATAAGCCTA CATACGCTCA AGTAATGGAT
CGACAAGGTA ATAATGTCAT TGTTGCTTTG GATGACGTAC TAGAACTTGA TAATAGCGCA
ATGGCTGAAC AAGTAAGTAC TCGTCTGCTT AGAACTCAGA CACAACAAGA TTTAACGGCG
ACACTTGATA CGCTTAAATC TAATACTGAA ATTAGTTATC CATTATTAGA GCAATAA
|
|---|
| Protein sequence | MMDRIREGST GLVVKIILGL IIFSFVFAGV GSYLVGGSQP LAAKVGEREI TRNDFEQVYQ
NERNRMQSQL GEYFSTLLGD PAYVEQFRKS VLDRMVNDAL LDNQAQELGL RVSDEQIRQA
ILSMPQFQKD GKFDEEIFNV SLRRAGFTSD SFAEYLRGDL VRNQLVSALE STEFTLSNEV
KAQGELEGQQ REIRTITLDT ATFAKNAKVT EEEVKEYYDA NKQQFVRPEQ VKVSYIELSG
ESLKAQAPIT DEEIQTYYNE NQDKYSTQEK REVSHILIKG DEADAQAVLA RLDAGEDFAT
VAKEDSQDIP TAKEGGSLGW IERGVIDPEF EDAAFQLVNV GDHSGLVKSA FGYHIIQLDA
IEAPKTKPLA KVSADIKAFL VDEHAADAFY SMQTELAEKA FESPDSLDDA AEAVNAKVIT
SDFFSQADAP ALLANSDVLQ AIYSAEVKED GLNSDVIEIA PEHVVVVRVE ESRDEMVLPL
EEVKASVITR LSQAKGEQKA LELAKNIITA LNKDDDAYLS EQGLVFTEAR MITRADELAN
DVYRLQKPTA DKPTYAQVMD RQGNNVIVAL DDVLELDNSA MAEQVSTRLL RTQTQQDLTA
TLDTLKSNTE ISYPLLEQ
|
|---|
| |