Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0820 |
Symbol | tnpR |
ID | 6988142 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 910404 |
End bp | 911612 |
Gene Length | 1209 bp |
Protein Length | 402 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 643379224 |
Product | transposase |
Protein accession | YP_002262327 |
Protein GI | 209694399 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00771423 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTGCGAAC TCGATATTTT ACACGACTCT CTTTACCAAT TCTGCCCCGA ATTACACTTA AAACGACTCA ACAGCTTAAC GTTGGCTTGC CACGCATTAC TTGACTGTAA AACTCTCACT CTTACCGAAC TTGGCCGTAA CCTGCCAACC AAAGCGAGAA CAAAACATAA CATCAAACGA ATCGACCGAT TGTTAGGTAA TCGTCACCTC CACAAAGAGC GACTCGCTGT ATACCGTTGG CATGCTAGCT TTATCTGTTC GGGCAATACG ATGCCCATTG TACTTGTTGA CTGGTCTGAT ATTCGTGAGC AAAAACGACT TATGGTATTG CGAGCTTCAG TCGCACTACA CGGTCGTTCT GTTACTCTTT ATGAGAAAGC GTTCCCGCTT TCAGAGCAAT GTTCAAAGAA AGCTCATGAC CAATTTCTAG CCGACCTTGC GAGCATTCTA CCGAGTAACA CCACACCGCT CATTGTCAGT GATGCTGGCT TTAAAGTGCC ATGGTATAAA TCCGTTGAGA AGCTGGGTTG GTACTGGTTA AGTCGAGTAA GAGGAAAAGT ACAATATGCA GACCTAGGAG CGGAAAACTG GAAACCTATC AGCAACTTAC ATGATATGTC ATCTAGTCAC TCAAAGACTT TAGGCTATAA GAGGCTGACT AAAAGCAATC CAATCTCATG CCAAATTCTA TTGTATAAAT CTCGCTCTAA AGGCCGAAAA AATCAGCGCT CGACACGGAC TCATTGTCAC CACCCGTCAC CTAAAATCTA CTCAGCGTCG GCAAAGGAGC CATGGGTTCT AGCAACTAAC TTACCTGTTG AAATTCGAAC ACCCAAACAA CTTGTTAATA TCTATTCGAA GCGAATGCAG ATTGAAGAAA CCTTCCGAGA CTTGAAAAGT CCTGCCTACG GACTAGGCCT ACGCCATAGC CGAACGAGCA GCTCAGAGCG TTTTGATATC ATGCTGCTAA TCGCCCTGAT GCTTCAACTA ACATGTTGGC TTGCGGGCGT TCATGCTCAG AAACAAGGTT GGGACAAGCA CTTCCAGGCT AACACAGTCA GAAATCGAAA CGTACTCTCA ACAGTTCGCT TAGGCATGGA AGTTTTGCGG CATTCTGGCT ACACAATAAC AAGGGAAGAC TTACTCGTGG CTGCAACCCT ACTAGCTCAA AATTTATTCA CACATGGTTA CGCTTTGGGG AAATTATGA
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Protein sequence | MCELDILHDS LYQFCPELHL KRLNSLTLAC HALLDCKTLT LTELGRNLPT KARTKHNIKR IDRLLGNRHL HKERLAVYRW HASFICSGNT MPIVLVDWSD IREQKRLMVL RASVALHGRS VTLYEKAFPL SEQCSKKAHD QFLADLASIL PSNTTPLIVS DAGFKVPWYK SVEKLGWYWL SRVRGKVQYA DLGAENWKPI SNLHDMSSSH SKTLGYKRLT KSNPISCQIL LYKSRSKGRK NQRSTRTHCH HPSPKIYSAS AKEPWVLATN LPVEIRTPKQ LVNIYSKRMQ IEETFRDLKS PAYGLGLRHS RTSSSERFDI MLLIALMLQL TCWLAGVHAQ KQGWDKHFQA NTVRNRNVLS TVRLGMEVLR HSGYTITRED LLVAATLLAQ NLFTHGYALG KL
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