Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0680 |
Symbol | recC |
ID | 6986602 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 757441 |
End bp | 760824 |
Gene Length | 3384 bp |
Protein Length | 1127 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 643379079 |
Product | exonuclease V subunit gamma |
Protein accession | YP_002262197 |
Protein GI | 209694269 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1330] Exonuclease V gamma subunit |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type [TIGR01450] exodeoxyribonuclease V, gamma subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0257765 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTTTACTG TTTATCATTC AAATCAACTT GATGTTCTTA AATCTCTTGT CGTTGAATTA ATTCGTCTAA ACCCTCTTGA TAACCCATTT GAGCAAGAGC AAATTCTCGT TCAAAGTCCG GGTATGTCGC AATGGCTTAA AATCGAACTC GCCAAAGAGT TAGGCATTGC CGCCAATCTT ACCTTTCCAC TTCCTGCTAC TTTTATTTGG GACTTGTTTA CTCAGGTTCT GGATGACGTG CCAAAGCGCA GTGCTTTTAA TAAAGAAGCC ATGACGTGGA AGATAGTGAC GTTATTACCA GAGTTATTAA AACAAGATGA ATTTGCGCCA CTGCAACGCT ATTTAGAAAA TGATGACAAA CAATTGAAGT GCTACCAACT CGCTGCAAAA ATTGCCGATA TCTTTGACCA ATATTTAGTA TTCCGCCCAG AATGGATCCA AAAATGGGAA GCGGGTGAAG AGGTTATAGA ATTAGAAGGC GAACATCCTT GGCAGCCTAT TTTATGGCAA GCCTTGTATG ACCAAACCTT GGCGCTGGGT CATTCACCTT ATCATCGTGC CAATATGTTC GAGCATTTTA TTGAAACCCT AGAAAATTAT CTGCAAACGG GAACCTTGCC AAAAGGCATG CCTAAGCGTT TATTTGTGGT GGGTATCACT TCATTGCCTC CTCGTTATTT AGATGCGCTA GCGGCTCTTG GGCAACATAT TGATGTGCAT TTAATGTTTA CCAACCCATG TCAACATTAT TGGGGTGATT TACGTGATAA TAAATACCTA GCAAAATTAG ATCGTCAAAA TCGAATAGCT AAACGTTTAT CATCAGATTT ATCTACACTA GAAAATGATG ATAGTGATTT ATTTACAAAC AAATCAGAGA ATTCTTTATT AGCGTCATGG GGTAAGTTAG GTAGGGATAA CTTTCAATTA CTGTTAGATT TAGAACCGAA TGAATATAAA ATTTTTGTGC CAACAGGAAG GGAAGATCTT CTACATTCTA TCCAATCTGA TATTTTAAAT TTAGAAGAAC GCAGTCGTGA TGATGTGCTT GATAACAGTG AGCACAAGCA ACCAATCAGC CCTGATGACC GTTCGATTCT TTTGCATTCA TGTCATAGCC CAATGCGTGA AGTAGAAGTT TTACACGATC AATTATTGGA TATGTTTGCC AATGATCCAG AATTAAAACC TCGCGATATT ATTGTGATGG TAGCAGATAT CAATGTGTAC AGTGCGGCGA TCCAAGCCGT CTTTGGTAAC GCAGCATTCG ATCGCTACAT TCCTTTTGCT ATTTCCGATC AAAGTGCCGA GCAAGAAAAC CCAGTGCTAT TGGCTTTTAT GAATTTGATG GCGTTGCCTG AAAATCGTTG TGGTTTGTCA GAGCTATTAA GTTTGTTGGA AGTTCCTGCG GTCATGTCAC GTTTTAAATT TAATGCCGAG CAGTTTGAAA TAGTAAAACG ATGGGCAGAA GAAACCGGCA TTCGCTGGGG ATTGGATAAC AGCACCTCTG CGCATTTTGA TCTTCCTGAA CATAATCAAA ATTCATGGTT ATTTGGTATT CAGAGAATGT TGCTTGGTTA TGCGATGGAG CAAGACGCGG GCTTATTTGA AGGCATGGCG AGCTACGAAC AAGTGCAAGG CATGAATGCC GAAATAGCAG GTAACTTAGC GCACTTTATT GATCAGCTTT TGACTTATCA GATTACCCTA GGCCAAGCGC AAAAAATTAA TGCATGGCGC ACCATTATTA ACCAACTAAT GGACGATTTT TTACTTGTTG AATTAGAAGG TGAACTGGTC GTTAAAAGCA TTCGAGATCA ATTGCAAAAA CTGGAAGAAA ATCTTGAAGA CGCCGGATTT GATGCACCAA TCTCTGCACC AATTATTAAT AATTACCTAA AAAACAATTT ATCAGGAGGA AAAGCGAGTC AGCGTTTCTT AGCGGGGAAA GTAAATTTCT GTACCTTAAT GCCAATGCGC TCAATTCCAT TTGATGTGAT CTGTTTACTT GGTATGACGG ATGGGTCTTA TCCGCGAACG ATGCCGGTTG AAGGTTTCGA TTTAATGCAG AAACGAATGA AGCCGGGTGA CCGTTCTCGT CGAGATGATG ATAGATATTT ATTTTTAGAA GCACTGCAAT CGGCGAATAA AGCGTTTTAT CTCAGCTATA TAGGTCGTTC TATTCGAGAT AATACAGAAA AAGCCCCTTC TGTTTTGGTG AGTGAACTGC TTGAATATTG TCAGCAAAGT TATTGTCTAG ATGGCGATAG TGAGCTGAAC CCTGAAGAGT CTGCTAAACA CCTAGTTAAA AAATTAACAA TAGAACATCC ATTAGTCCCA TATAGCCAAC AGAGTTTTGT GGGTGATAAC ACCAGTTATG CCAGTGAATG GTTACCAACC GCAAAACTAG AAGGCCAAGC CGCGCCAGAA TTCCAAACTG AACCTTTAGT GTTTGCACCA GAATCAAAAG AGCTTGAATT AACCGAACTA CAACGCTTTT GGCGCTTGCC TGTCGCCTAT TTCTTTAACC GTGGTTTAAA AGTATTTTTT GAAACGGTAG AGAGCCGAGT TGAAGATGAT GAACCGTTTT CTATTGATGG TCGTACTGGT TATGGAATGA AATCAGAATT GCTAGAAGAG TTATTGGCCT ATGATGATCC TAACCAAGTA TTTCAACTAA GTCGTGAGTT TTATCAGCAA CAAAAAGCGC AAGGAAAATT ACCGATTGGT AGCTTTGGTG AGATCGCGGC AGACAAAGAA GTGAACACGG TAAAAGAGTT AGTGGATCAT ATTCAGCCAT TAACGACATC ACCATTAGAG GATCAAGAAG TGCGTTTACG CTTTACTTTT CCTCATGGTG AGATGGAATT ACAAGGCTGG CTAAAGCAGC GTTATAAAGA AGGAATGCTG CGTTATCGTG GTGGTAAAAT TCGTTCTCAT GAAGTCTTAG CAACGTGGAT TGATCATCTG TGTTTGTGTG CCATGAAGCA ACAGCAATTT ACTCACCTCT TTGGGACCGA TGCGATATAT CATTTTGAGC CAATTGAAAC AGAAAAAGCG TATCAACATT TAGAAGTGAT ATTAAGCCTT TATATTTCTG GTAACTGTGC GCCATTGCCT TATTTACCAA AAGCCGCGTT GGCCGGGCTA GAAGCACACA TTGATAAAAA AGGTGTGTGG AATGACGATG ATGAAACCCA TGAAAAAGCA CTGAAAAAAA TGGCTGATGA ATACAGTGGA ACTCGTTACG CGGGTGAAAA CAGCAATGAT TATGTCATGC GTATGTGGCC CGAGTGGAAT GACGAATTAG GTCAGACTAT TTTTGATAAT GCGAAAAATG TATTACATGA TGCCTTGTTA CACAGTGAGA AAGAAAAACT GTAA
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Protein sequence | MFTVYHSNQL DVLKSLVVEL IRLNPLDNPF EQEQILVQSP GMSQWLKIEL AKELGIAANL TFPLPATFIW DLFTQVLDDV PKRSAFNKEA MTWKIVTLLP ELLKQDEFAP LQRYLENDDK QLKCYQLAAK IADIFDQYLV FRPEWIQKWE AGEEVIELEG EHPWQPILWQ ALYDQTLALG HSPYHRANMF EHFIETLENY LQTGTLPKGM PKRLFVVGIT SLPPRYLDAL AALGQHIDVH LMFTNPCQHY WGDLRDNKYL AKLDRQNRIA KRLSSDLSTL ENDDSDLFTN KSENSLLASW GKLGRDNFQL LLDLEPNEYK IFVPTGREDL LHSIQSDILN LEERSRDDVL DNSEHKQPIS PDDRSILLHS CHSPMREVEV LHDQLLDMFA NDPELKPRDI IVMVADINVY SAAIQAVFGN AAFDRYIPFA ISDQSAEQEN PVLLAFMNLM ALPENRCGLS ELLSLLEVPA VMSRFKFNAE QFEIVKRWAE ETGIRWGLDN STSAHFDLPE HNQNSWLFGI QRMLLGYAME QDAGLFEGMA SYEQVQGMNA EIAGNLAHFI DQLLTYQITL GQAQKINAWR TIINQLMDDF LLVELEGELV VKSIRDQLQK LEENLEDAGF DAPISAPIIN NYLKNNLSGG KASQRFLAGK VNFCTLMPMR SIPFDVICLL GMTDGSYPRT MPVEGFDLMQ KRMKPGDRSR RDDDRYLFLE ALQSANKAFY LSYIGRSIRD NTEKAPSVLV SELLEYCQQS YCLDGDSELN PEESAKHLVK KLTIEHPLVP YSQQSFVGDN TSYASEWLPT AKLEGQAAPE FQTEPLVFAP ESKELELTEL QRFWRLPVAY FFNRGLKVFF ETVESRVEDD EPFSIDGRTG YGMKSELLEE LLAYDDPNQV FQLSREFYQQ QKAQGKLPIG SFGEIAADKE VNTVKELVDH IQPLTTSPLE DQEVRLRFTF PHGEMELQGW LKQRYKEGML RYRGGKIRSH EVLATWIDHL CLCAMKQQQF THLFGTDAIY HFEPIETEKA YQHLEVILSL YISGNCAPLP YLPKAALAGL EAHIDKKGVW NDDDETHEKA LKKMADEYSG TRYAGENSND YVMRMWPEWN DELGQTIFDN AKNVLHDALL HSEKEKL
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