| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0664 |
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| Symbol | rluD |
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| ID | 6986589 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 736402 |
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| End bp | 737376 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 643379058 |
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| Product | 23S rRNA pseudouridine synthase D |
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| Protein accession | YP_002262182 |
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| Protein GI | 209694254 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0008107 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACAAC AAATAGAATT AACAAGTACA GTAAAAGACA GTCAATTGGG TCAACGCTTG
GATCAGGCGG CGGCTGAATT ATTTTCTGAT TTCTCTCGTT CACGCATCAA AGAGTGGGTA
CTTGCGGGTA GCATTTCTGT TAACGGCGAA GTGATCACTA AAGCTCGTGT AAAAATGATG
GGCGGTGAAG AAATCGTAGT AAAAGCGGAA TTAGAAGATG AAGAGCGTTG GTTAGCTCAA
GATATCCCGC TTGAAATCGT ATATGAAGAT GATGACATAT TAGTAATTAA TAAGCCTCGT
GATCTTGTTG TACATCCAGG TGCTGGTACG CCTGATGGCA CAATACTGAA TGCATTGTTG
TTTCATTACC CAAGCATTGC AGAAGTACCT CGCGCAGGTA TCGTGCACCG TCTAGATAAA
GATACTACTG GTTTAATGGT AGTAGCTAAA ACAGTACCCG CTCAAACACG TTTAGTGCGT
GCGCTTCAAA AGCGTAAGAT TACTCGTGAG TATGAAGCGA TAGTATTAGG TCGTATGACG
GCTGGCGGCA TGATTGAAAA GCCAATCGGA CGTCACCCAC AAAAACGTAC GCTAATGGCG
GTACATGAAT TAGGTAAAGA TGCAGTAACG CATTACCGTG TTGCAGAGCA TTTCCGTATT
CATACTCGTC TACGCTTACG TCTTGAAACC GGTCGTACTC ACCAAATTCG TGTGCATATG
TCTTTTCTTC AGCATCCATT AGTTGGTGAT ACCGCTTATG GTGGCCGTGC TCGTATCCCT
AAAGGTGCGT CACAAGAATT GATTGATATG ATCCGTGGCT TTAACCGTCA AGCTCTGCAT
GCGGCGATGT TACGTTTTGA TCACCCAATT ACAGGTGAAG TCATGGAATT CCATGCGCCA
ATTCCTGACG ATATTATTGC TCTAGCTCAA GCATTACGCG ACGATGAGCG TTTATTGCAT
GAAGAAGAGT ATTAA
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| Protein sequence | MAQQIELTST VKDSQLGQRL DQAAAELFSD FSRSRIKEWV LAGSISVNGE VITKARVKMM
GGEEIVVKAE LEDEERWLAQ DIPLEIVYED DDILVINKPR DLVVHPGAGT PDGTILNALL
FHYPSIAEVP RAGIVHRLDK DTTGLMVVAK TVPAQTRLVR ALQKRKITRE YEAIVLGRMT
AGGMIEKPIG RHPQKRTLMA VHELGKDAVT HYRVAEHFRI HTRLRLRLET GRTHQIRVHM
SFLQHPLVGD TAYGGRARIP KGASQELIDM IRGFNRQALH AAMLRFDHPI TGEVMEFHAP
IPDDIIALAQ ALRDDERLLH EEEY
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