| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0621 |
|---|
| Symbol | deoB |
|---|
| ID | 6988401 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 683742 |
|---|
| End bp | 684962 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 643379009 |
|---|
| Product | phosphopentomutase |
|---|
| Protein accession | YP_002262141 |
|---|
| Protein GI | 209694213 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1015] Phosphopentomutase |
|---|
| TIGRFAM ID | [TIGR01696] phosphopentomutase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.482863 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGTG CAATTATTTT AGTTCTTGAT TCATTTGGTA TTGGTGCAGC AGGTGATGCT
GAAAAATTTG GTGATGTGGG TTCAGATACA ATGGGTCACA TTGCAGAACA GTGTGACAAA
GGACTTGCCG ATAATGGAAA CCGTAAAGGA CCATTAACGC TTCCAAATCT ATCAAAGCTG
GGTTTAGCAA TGGCAGGTAA AGAGTCTACG GGCAAATTAG CCGCAGGTTT AGACGCTGAT
GCTGAGATTA TTGGTGCTTA TGGTCATGCC GCTGAATTGT CTTCAGGTAA AGATACGCCT
TCTGGTCACT GGGAAATTGC AGGCGTACCT GTCTTATTTG ATTGGGGTTA CTTTAGCGAT
AAAGAAAATA GTTTCCCTAA AGAGTTAACC GACCGAATTC TTGCTCGTGC CAACCTTTCT
GGTTACCTAG GTAATTGCCA TGCATCAGGT ACACAAGTAC TGGATGATTT AGGTGAAGAA
CACATGAAGA CGGGCATGCC GATCTTCTAC ACCTCTGCTG ATTCGGTATT CCAAATTGCG
TGTCATGAAG AAACGTTTGG CTTAGATAAT TTATTAACAC TTTGCCAAAT CGCACGTGAA
GAACTTGAAG ATTATAATAT TGGCCGAGTG ATAGCGCGTC CATTTATTGG TGCAGGTAAA
GGTCAATTTG AACGTACGGG TAACCGCCGC GATCTTTCTC TGGAACCGCC AGCAATTACC
GTATTACAAA AACTGGTAGA AGAGAAAAAC GGTCACGTAC ATTCTATTGG TAAAATCTCT
GATATTTATG CTGGTTGTGG TATTACACAA AAAACCAAAG CAACAGGCAT TCCAGCATTG
TTTGATGCAA CCAAAGAGGC AATTACGGCG GCGAGTGATA ACACCATCGT ATTTACTAAC
TTTGTGGATT TTGATTCAGC GTATGGTCAC CGTCGTGACG TTGCAGGTTA TGCGGCGGCA
CTAGAGTATT TTGATGGAAG ACTTCCAGAG ATCATGGAAA TGCTACAAGA AGACGATATT
CTAATCCTAA CGGCTGATCA TGGTTGTGAT CCTACATGGC CTGGTACCGA TCATACTCGT
GAACATATTC CCGTTCTTGT TTATGGACAC AAAGTACCTG CGGGTTCATT GGGGCTTCGT
GATACCTTTG CCGATATAGG GCAGACCTTA GCAGAGTATT TTGAAATCTC TGATATGGAA
TATGGAAAAT CATTCCTATA A
|
|---|
| Protein sequence | MKRAIILVLD SFGIGAAGDA EKFGDVGSDT MGHIAEQCDK GLADNGNRKG PLTLPNLSKL
GLAMAGKEST GKLAAGLDAD AEIIGAYGHA AELSSGKDTP SGHWEIAGVP VLFDWGYFSD
KENSFPKELT DRILARANLS GYLGNCHASG TQVLDDLGEE HMKTGMPIFY TSADSVFQIA
CHEETFGLDN LLTLCQIARE ELEDYNIGRV IARPFIGAGK GQFERTGNRR DLSLEPPAIT
VLQKLVEEKN GHVHSIGKIS DIYAGCGITQ KTKATGIPAL FDATKEAITA ASDNTIVFTN
FVDFDSAYGH RRDVAGYAAA LEYFDGRLPE IMEMLQEDDI LILTADHGCD PTWPGTDHTR
EHIPVLVYGH KVPAGSLGLR DTFADIGQTL AEYFEISDME YGKSFL
|
|---|
| |