Gene VSAL_I0591 details

Gene Information

• Locus tag: VSAL_I0591
• Symbol: rrmJ
• ID: 6986557
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 652081
• End bp: 652710
• Gene Length: 630 bp
• Protein Length: 209 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 643378976
• Product: 23S rRNA methyltransferase J
• Protein accession: YP_002262111
• Protein GI: 209694183
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0293] 23S rRNA methylase
• TIGRFAM ID: [TIGR00438] cell division protein FtsJ

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.00595244
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTAAGA ATAAACTTTC AGCAAGCTCT GGCCGCTGGT TAAAAGAACA TTTTGATGAT 
AAATACGTTC TTGAAGCGCA AAAAAGAGGC TATCGCTCTC GTGCTATTTT TAAACTTGAA 
GAAATTCAAA ATAAAGACAA GCTATTAAAG CCTGGAATGA CGGTGGTTGA CCTTGGTGCT 
GCTCCTGGTG GGTGGTCACA ATATGCGGTT GAGCAAGTCG GTGATTCTGG TCAAGTAATC 
GCTTGTGATA TTTTAGCTAT GGACTCAATT GCGGGTGTGA GCTTTTTACA AGGGGATTTT 
AGAGAAGAAG CGGTACTAGA CGCATTGCTT GAACGCATAC AACCAGATAT GGTAGATGTA 
GTAATGTCGG ATATGGCGCC AAATATGAGT GGTAACCCTT CGGTAGATCA ACCAAGATCA 
ATGTATCTTG TTGAGTTAGC GTTGGATATG TGCCGCCAAG TATTGGCTCC TAATGGCAGT 
TTCACAGTTA AAGTATTCCA AGGTGAAAGC TTTGATGCAT ACTTACAAGA AGTACGTAAG 
GTATTCAAAG TCGTTAAGAT TAGAAAACCT GATTCATCAC GAGCTCGCTC TCGTGAAGTG 
TATATTGTAG CCACTGGTTA CAAAGGATAA 

 

Protein sequence

MSKNKLSASS GRWLKEHFDD KYVLEAQKRG YRSRAIFKLE EIQNKDKLLK PGMTVVDLGA 
APGGWSQYAV EQVGDSGQVI ACDILAMDSI AGVSFLQGDF REEAVLDALL ERIQPDMVDV 
VMSDMAPNMS GNPSVDQPRS MYLVELALDM CRQVLAPNGS FTVKVFQGES FDAYLQEVRK 
VFKVVKIRKP DSSRARSREV YIVATGYKG