| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0492 |
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| Symbol | pmbA |
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| ID | 6986520 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 552536 |
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| End bp | 553879 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 643378872 |
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| Product | peptidase PmbA |
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| Protein accession | YP_002262015 |
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| Protein GI | 209694087 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0312] Predicted Zn-dependent proteases and their inactivated homologs |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.855998 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGATGCAA AAGCCCAAAT GATGAATCAA AAAATAGAAC TTGAAGCAGC AGTAGCGAAG
GCTTTAGAAA TGGCAACTAA GCATGCGAGT GCTGCAGAAG TTGCGATTAC AAAAACGACA
GGAATCAGTG TGTCAACTTT GATGGGAGAG GTTGAAAACG TTGAGTTTAA TCGTGATGGC
GCATTAGGTA TTACGGTTTA CCGTGGCCAT AGAAAAGGCA GCGCATCGAC ATCTGATTTA
AGTGACAAAG CCATTCAAGA GACGGTAGCA GCTGCGCTTG ATATCGCAAA TTATACGTCA
GAAGACCCAT TTTCAGGTCC GGCACCAAAA GAATTAATGG CGCAAAATAT TCCTGATTTA
GATTTGTTTC ATCCTGATGA TCCAGAGCCA GACTATGCCG CACAAAAGGC AATTGAAGCT
GAAGAAGCCG CTTTAGCTTA TCATTCATCC ATTAAGCAAA GTGATGGAGC GAGCTACGAT
AGCCATTATG GTATTAAGGT TTATGGTAAT AGTCATGGCA TGTTAGCGAG CTATCCATCA
AGTCGCCACA GTATTAGCTG CAGTGTCATT GGTGTTGATA AAAATGGCAA CATGGAGCGA
GATTACAGCT ACACCGTTGC TCGCCATCGT GATGATTTAT GGGATGCGAA AAAAGTAGGC
TTAGACGCTG CTGAGCGAAC TGTCAGCCGT TTAGATGCTC AAAAATTAAA TACGATGAAA
GTACCGGTTA TGTTTTCAGC TGATGTTGCA ACGGGCTTAA TTGGGCATCT TGTGATGGCG
ATTAGCGGAG CAAACCTTTA TCGTAAATCA ACGTTTATGC TTGATAAGCT AAATGAAAAA
ATCTTACCAG ATTGGTTTAA CGTGAGTGAA CGCCCACATA TATTGAAAGG TCTAGCAAGC
AGTCCATTTG ATAGCGAAGG GCTGTATACA CAAGATCGTG AAATAATCAC TGATGGCGTA
TTAGCGACGT ATTTACTAAC GAGCTACGCT GCACGAAAAT TGAATATGAC ACCAACGGGT
CACGCTGGTG GTATTCATAA CTGGTTTGTT AAATCAACAG GCCAAAGTTT TGATCAAATG
CTCAAAACAA TGGGAACGGG TCTTCTTGTT ACTGAGCTTA TGGGCCAAGG CGTAAATACG
GTGACGGGTG ATTACTCTCG TGGTGCCGCT GGTTTTTGGG TTGAGAATGG TGAGATCCAA
TATCCTGTGT CAGAGATTAC CATTGCGGGC AACTTAGCAG AAATGTACCA AAACATTATT
GCAGTCGGTA GTGATGTAGA AACACGTTCA CAAATTCAAA CGGGTTCAAT CCTAATTGAA
TCGATGAAAA TAGCCGGTCA GTAA
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| Protein sequence | MDAKAQMMNQ KIELEAAVAK ALEMATKHAS AAEVAITKTT GISVSTLMGE VENVEFNRDG
ALGITVYRGH RKGSASTSDL SDKAIQETVA AALDIANYTS EDPFSGPAPK ELMAQNIPDL
DLFHPDDPEP DYAAQKAIEA EEAALAYHSS IKQSDGASYD SHYGIKVYGN SHGMLASYPS
SRHSISCSVI GVDKNGNMER DYSYTVARHR DDLWDAKKVG LDAAERTVSR LDAQKLNTMK
VPVMFSADVA TGLIGHLVMA ISGANLYRKS TFMLDKLNEK ILPDWFNVSE RPHILKGLAS
SPFDSEGLYT QDREIITDGV LATYLLTSYA ARKLNMTPTG HAGGIHNWFV KSTGQSFDQM
LKTMGTGLLV TELMGQGVNT VTGDYSRGAA GFWVENGEIQ YPVSEITIAG NLAEMYQNII
AVGSDVETRS QIQTGSILIE SMKIAGQ
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