Gene VSAL_I0485 details

Gene Information

• Locus tag: VSAL_I0485
• Symbol: mreD
• ID: 6988833
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 542927
• End bp: 543418
• Gene Length: 492 bp
• Protein Length: 163 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 643378865
• Product: rod shape-determining protein MreD
• Protein accession: YP_002262008
• Protein GI: 209694080
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG2891] Cell shape-determining protein
• TIGRFAM ID: [TIGR03426] rod shape-determining protein MreD

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.00628066
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGAGTA GTCATCTTAT GCGTGGAAGA GTCATTATTT GGCTCTCTTT TTTGATCGCA 
TTAATATTAC AGGCGGCACC TTGGCCTGGA ACATTAGAAG TATTACGACC TTCTTGGATC 
ATATTAGTGA CTTTCTATTG GGTATTAGCA TTGCCTCATC GGGTTAATGT TGGTACTGCC 
ATGATACTTG GGATCTTATG GGATCTATTA CTTGGCACAA CGCTTGGTAT CCGTGGAATG 
ACGATGGCGA TTTTGGTCTA TCTGGTTGCT GCGAATTTTA AGTTGTTGAG AAACCTTGCT 
CTTTGGCAAC AAGCTGCAAT CTTCTCAGCA TTAACGTTAC TGGGTAAACT CTTAGAATTT 
TTAGGCGAAT TTTTAGTTCA TGATGTGTCA TTCAACGGAC ATTTTTTATG GGCGGGCGTG 
TTAAACTTTA TTTTGTGGCC TTGGTTATTT TTATTGATGC GTAGAGTTCG CCGTCATTGG 
TCTATTCGAT AA 

 

Protein sequence

MTSSHLMRGR VIIWLSFLIA LILQAAPWPG TLEVLRPSWI ILVTFYWVLA LPHRVNVGTA 
MILGILWDLL LGTTLGIRGM TMAILVYLVA ANFKLLRNLA LWQQAAIFSA LTLLGKLLEF 
LGEFLVHDVS FNGHFLWAGV LNFILWPWLF LLMRRVRRHW SIR