Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0470 |
Symbol | mshM |
ID | 6988840 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 526758 |
End bp | 527606 |
Gene Length | 849 bp |
Protein Length | 282 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 643378852 |
Product | type IV pilus, mannose-sensitive hemagglutinin D (MSHM) |
Protein accession | YP_002261995 |
Protein GI | 209694067 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3267] Type II secretory pathway, component ExeA (predicted ATPase) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00298128 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTATGAAT CCCATTTTGG GCTGAAGCAG CTTCCATTTA CGCTTACGCC AAACACATCG CTTTTCCATG GATTGTTGCC TCATTATGAA GCAATTCAAA CCGTGTTATC TGCGATATCA ATGGGAGAGG GAGTCATCAA AGTAACGGGC GAAATTGGCA CTGGAAAAAC ACTAGTCTGC AGAATGCTAA TGAATCAGCT GCCGAGTAAT GTTGAGTTAC TTTATTTGCC TAATCCTGTG ATGAATGGAC ATGAATTACG TCAAGCGTTA GCAAAAGAGT TAAGGATTGA ACAGCATGGA GACGATATTG CTTTAACGGA TCGTATTCAT GAGAAAATTA TAGAGTTACA AGCACTAGGA AAAACAGCCG TTGTTTTTCT TGATGAAGCT CAGGCATTAA GTGATGAAGC ATTAGAAACC TTACGATTGT TTGGCAATTT AGAAACCGAC TATAAAAAAT TATTACAGAT AGTGTTGTTT GGTCAGCCCG AATTAGATGA AAGATTACAG CAATACCATT TAAGACAACT TCGTCAACGA ATTACGTTTT CAGCCACATT AAGACCATTA ACTATGAGTG AAACGGTGGC TTATATTCGT TTCCGAATGA CTGAATCTGG GTGTGAAGTG AATCCTTTTT CATTGACTCA AATGAAAGCT ATTTGGCGAG CGACAACAGG GGTTCCGCGG TTGATTAATC AGGTATGCCA TAAATCATTG TTAATTTCGT TTTCTGAGCA GTTAATTATC GTATCTTCTC GTTCTGTTTT TAGTGCCATT AAAGATACAA CAGACACAAT GAAACCTACC TATTATTTCC CTAAGTTTTG GGGTTGGAGA AAAGCGTGA
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Protein sequence | MYESHFGLKQ LPFTLTPNTS LFHGLLPHYE AIQTVLSAIS MGEGVIKVTG EIGTGKTLVC RMLMNQLPSN VELLYLPNPV MNGHELRQAL AKELRIEQHG DDIALTDRIH EKIIELQALG KTAVVFLDEA QALSDEALET LRLFGNLETD YKKLLQIVLF GQPELDERLQ QYHLRQLRQR ITFSATLRPL TMSETVAYIR FRMTESGCEV NPFSLTQMKA IWRATTGVPR LINQVCHKSL LISFSEQLII VSSRSVFSAI KDTTDTMKPT YYFPKFWGWR KA
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