| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0419 |
|---|
| Symbol | cpdB |
|---|
| ID | 6986481 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 454084 |
|---|
| End bp | 456066 |
|---|
| Gene Length | 1983 bp |
|---|
| Protein Length | 660 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 643378795 |
|---|
| Product | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein |
|---|
| Protein accession | YP_002261948 |
|---|
| Protein GI | 209694020 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
|---|
| TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGAGAACA CTATGAAACT GTCTATTAAA CCTCTATCGC TAGCAGTACT GGGTGGCTTA
TTAACCCTTT CAGGCTGTAC ACCAGCAGAA ACAAATGAAG TGATTAAACT GCGTATTGTA
GAAACAACGG ATATCCACAC TAATCTGATG GATTACGATT ACTACAAAGA CAAACCATCG
CAAAAAATTG GTTTAGCGCG CACTGCAACA TTAGTAAAAG AAGCTCGTGG TGAGGTGATA
AACAGTGTTT TAGTTGATAA TGGTGATTTA CTGCAAGGTA GTCCAATGGG TGACTACATG
GCAGACAAAG GATTAGAAGA AGGGGAAGTT CACCCTGCAT ATAAAGCGAT GAATCAATTA
AGCTATGATG CCGGTAACAT CGGTAACCAT GAGTTCAATT ACGGTTTAGA TTTCTTAGCC
GAATCCATTA ACGATGCCAA CTTCCCTTAC ATCAATGCCA ATGTGTATGA CGCAAAAACA
AAAGAACATT ACTTCAAACC ATACATTATT AAAACGCACA AATTTAAAGA TACCGCAGGT
GTAGAACACT ACATTAAAGT GGGTTACATC GGATTTGTGC CACCACAAAT CATGGTATGG
GATAAGAAAA ACCTTGAAGG AAAAGTCTTC GTAAAAGACA TCATTGAAAC CGCAAATGAA
ATCATTCCTC AAATGAAGTC TGAAGGCGCA GATGTCATTG TCGCTATCCC TCACTCAGGT
GTTTCTACTA ATCCATATAA ACAAGGCGAA GAAAATTCGA CTTACTACTT ATCTGAGGTA
GAAGGCATTG ATGCGATCGC TTTTGGTCAC TCTCATGCCG TCTTCCCAGG AAAAGGGTTT
GATAACATGC AAGGCATCGA TAACGTAAAT GGCACAATAA ATGGCGTTGC CGCGGTGATG
CCTGGACGTT GGGGTAGCCA TGTTGGTGTG ATGGATTTAA CGCTTGAACA GAAAGACGGC
AAATGGATTG TTGCAAAAAG CCAAGCAGAA GCTCGCCCTA TCTTTGATAA AGAAAACAAC
AAATCATTAG CTGCTGCTGA TGAAGGGATT GTTAAAGCAT TAGAAGCGGA TCATAAAGGC
ACTCGTGAAT TTGTTAACCA ACCTATTGGT AAAGCTGATG ATGTGATGTA CAGCTTCCTA
GCCTTAGTTC AAGATGATCC AACCGTGCAA ATTGTTAACC TTGCACAAAA AGATTACGTT
GAACGTTTCA TTCAAGGGGA TCCTGATTTA GATGGTACTC CTGTACTTTC TGCTGCAGCG
CCATTTAAAG CTGGTGGTCG TGGAAATGAC CCAACAAACT TCACTGAAGT TGAATCAGGC
CAATTAACGT TCCGTAATGC GGCTGATTTA TACCTATACC CGAATACACT TGTTGCAATG
AAAGTAACGG GTAAAGAAGT CAAAGAATGG CTTGAGTGTT CTGCTGGTCA ATTTAAACAA
ATCGACATCA ACAGCACAGC TCCTCAACAG TTAATTGATT GGGATGGCTT CCGTACTTAT
AACTTCGATG TAATCGATGG CGTAAATTAT CAGATCAACG TAACACAACC AGCGAAATAC
GATGGTGACT GTAACTTAAT CAACGAAGGT TCAGAGCGAA TTATAGGGCT TACTTACCAA
GGTAAACCAA TTGATGCGAA ACAAGATTTC CTTATAGCTA CTAACAATTA CCGAGCTTAC
AGCGGCAAGT TCCCAGGAAC AGGAACGGAC TTTATCGCGT TCGATTCTCC AGATGAAAAC
CGTACCGTTC TTGCTAGCTA CATTTCACGA GTAAGTAAAG AGGAAGGTCA AGTTCAACCA
AGTGCTGATA ATAATTGGTC TTTCGCTCCA ATCGAAGGAG GGGAAAATCT GGATATCCGT
TTTGAAACTT CACCAACAGA AAAGGCAACT CAATTCATTA AAGATAATGG TCAATACCCA
ATGAAACAAG TCGCGACAGA CGATGTTGGT TTTGCCGTTT ATAACATTAA TCTAAGTAAA
TAA
|
|---|
| Protein sequence | MENTMKLSIK PLSLAVLGGL LTLSGCTPAE TNEVIKLRIV ETTDIHTNLM DYDYYKDKPS
QKIGLARTAT LVKEARGEVI NSVLVDNGDL LQGSPMGDYM ADKGLEEGEV HPAYKAMNQL
SYDAGNIGNH EFNYGLDFLA ESINDANFPY INANVYDAKT KEHYFKPYII KTHKFKDTAG
VEHYIKVGYI GFVPPQIMVW DKKNLEGKVF VKDIIETANE IIPQMKSEGA DVIVAIPHSG
VSTNPYKQGE ENSTYYLSEV EGIDAIAFGH SHAVFPGKGF DNMQGIDNVN GTINGVAAVM
PGRWGSHVGV MDLTLEQKDG KWIVAKSQAE ARPIFDKENN KSLAAADEGI VKALEADHKG
TREFVNQPIG KADDVMYSFL ALVQDDPTVQ IVNLAQKDYV ERFIQGDPDL DGTPVLSAAA
PFKAGGRGND PTNFTEVESG QLTFRNAADL YLYPNTLVAM KVTGKEVKEW LECSAGQFKQ
IDINSTAPQQ LIDWDGFRTY NFDVIDGVNY QINVTQPAKY DGDCNLINEG SERIIGLTYQ
GKPIDAKQDF LIATNNYRAY SGKFPGTGTD FIAFDSPDEN RTVLASYISR VSKEEGQVQP
SADNNWSFAP IEGGENLDIR FETSPTEKAT QFIKDNGQYP MKQVATDDVG FAVYNINLSK
|
|---|
| |