| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0380 |
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| Symbol | |
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| ID | 6986451 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 416997 |
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| End bp | 420101 |
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| Gene Length | 3105 bp |
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| Protein Length | 1034 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 643378757 |
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| Product | integral membrane protein, AcrB/AcrD/AcrF family |
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| Protein accession | YP_002261910 |
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| Protein GI | 209693982 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTAAGT TTTTTGCAAG ACATCCAACC GCCGCCAATT TATTAATGCT TTCTATTTTG
CTGCTTGGTG TGGTGTCACT ATCTCAATTA AAACGAGAAA CCTTTCCTGA GTTTAGCCCC
CCTTATATTC TCGCTGGGGT GGTTTACCCT GGCGCTTCAC CACAAGAGGT TGAAGAGAGT
ATCTGTATCC GCCTAGAGGA TGCCGTTGAT GGATTAGGCA ATATTGAAGA AACCAAATGT
GAGGCAATTG AAGGTTCTGC TCGTTTGGTC ATTAAATTGA ATGCGAAAGC CGACATTGGA
CGAATGTTGG TTGATGTTCA GACTCAAATT GATTCAATTA ACGATTTTCC TAAAGAGATA
GAGTCACCGA TAGTTCAAGA ATTGGATTGG AATGAACCCG TGGTGGATGT CGCGATTACG
GCAGACACAA CATGGCCAGA ATTAAAAGCG TATGCAGAAA AGCTCAAACA AAGCCTCAAG
CTTGATTATG ATGTTTCCTT AGTTGAAGTG AGTGGTTTTT CGGACCACCA ATATCGTGTT
GAGTTAGATG AAGGTGCCAT TCGTCAGCTT GGTTTAAATG TCAGTGACAT TGCGAATAAA
CTGGCTGAAC AAAATGTAAA GCTACCAAGC GGCAGTATTG AAACCCCAGA AAAGAATTTT
TTAATTCGCT TTGATGAAAG AAAAACAACC CCGCAAGAAT TGGCAAAAAC AGTCATGGGT
GCATCAGCTA ATGGGGCGTT AATCCGTTTA GGCGATATTG CCACGATAAC CGATCGTTTT
GAACTGGATG AACAAAAGGT ATTGTTTGAT GGTAAGCCGT CAGCGTTACT TAAGATCAGT
AAAAATAAAG AAGAAGACGC CTTACGCATT AAAGATCGAG TGACGGAGTT TGTTAAATAT
CAACAATCTG TTGCTCCTGA TGGTGTGGCA TTAGAAATGA CCAACGATCT TTCTTCTTTG
TTGTGGGATC GATTAACCAT GATGGTGAAA AATGGCTGGC AAGGGATCAT TCTTGTTTTC
CTCACCATGT GGCTCTTTTT TACGTTCCGA TATTCCTTTT GGGTTGCAGC AGGCCTTCCG
GTGGCTTTTC TTGGCGGTTT ATTTTTAATG GCGAGTTTTG GGCTCTCAAT TAATATTATG
TCACTGGTCG CCCTGTTGAT GGCGATAGGG ATAATGATGG ATGACGCCAT TGTAATTGCA
GAATCCATCG CTTCCCATTT AGACCGAGGG CAAGAGATAG ACGATGCCGT ATATAACGGG
GTGAAGAAGG TTTTTCCCGG CGTACTGTCT TCTTTCTTAA CGACGGTGTG TATTTTTGGT
AGCTTGATGT TTCTACAAGG AGAAATGGGG GCTGTTTTAA AAGTCATTCC ACAAGTACTG
ATATTAGTTC TGTCTCTTAG TCTAATTGAA GCGTTTTTAA TTCTTCCTAA TCACCTTAGT
CACTCATTAC ATAAGGCAAA AAAAGACAAG CCAATTTCAG GCATCAAAAA AATCGTATTA
GATCGTTTTG AGCATTTTAG AAATGTCACT CTAGTGAAAG CCGTCACAAA AGTAGTGGAA
TGGCGTTATG CCTTTTTAGG TGCCGTTATT GCGAGTTTGC TGATTTCTTT TTCACTCATT
TCTGGCGGTG CTCTGAAGTT TGTAGGTTTC CCTGAGTTGG ATGGTGATAT TGCTGAAGCG
CGAATTATTC TGCCCCCGGG CACGTCACTT TCTCAAACTG AAATTGTGGT TGATAAAATT
GTTTCTGCGG CAGAGAAGTT AAATAAAGAA TGGTGTGACA ATAATGAAGA TGGTCGTCCA
TTGGTTGAGC ACATTACTCA ACAATTTAAT ACCAATGCGG ATGCGAGTGA ATCAGGCCCG
CACCTTGCGA CCATTCGATT AGATTTATTG GGAGCAGAAG AGCGCACTAC CTTAATTGAT
GATTTTATTG ATGCGTGGCG TGAAGAAGTG GGCGATTTAG CTGAACCAAT AACCATGGTT
TATAAGCAAC CGACGATGGG GCCGGGAGGT CGGGCGATTG AAATTCGGAT GATGGATGAT
GATTTACATA CATTGAAATC AGCATCATTA GAAGTTCAGG CCTATTTGAA TGAGTTTTCT
GGCGTGTATG GTGTGCTTGA TGACATGCGT ATGGGCAAGG AGGAGGTTCT GGTGAAATTA
AGACCGGGCG CTGAAACCTA TGGCGTTACT GGCCAACTGA TCGCAAATCA ATTACGAGCG
GCGTATTTTG GACAAACGGC AGATGAGATC CAACTCGGTG TTGAAAATAT TGAAATTGAA
GTGCGTTTGA ATAAAGAGCA AGCGGGAGAT TTACACACGT TAGAAAACTT CCCTATTATC
ATGCCTGATG GCAGTCAAAT CCCCTTAGCT TCTATCGCTA CATTGGATTT TCAACGTAAC
TATGTTCGAA TTCAACGCAT TAATGGATTA AGAACCTTAA GCGTATTTGG CGATGTTCAT
GCATCACAAG TCAGCTCTTC TGAAATATTA GCTCAATTTA GATCAGAGCT TGCGCCCGCG
CTACAAAATA AATACCCACG TTTGCGTTTT GATTTTGAAG GTGAAGCGAA AGACACCGCC
GAAACCGGAC AATCAATGGG CACGGGTTTT ATGCTGGGCT TATTTGGTGT GTTTGTTATT
TTGAGTTTTC AATTTAGAAG TTATCTTGAA CCTTTTGTCG TCATGCTGGC AATTCCACTC
GCGTTGATTG GGGTGTTGTG GGGGCATGTA CTATTAGGTC ACCCATTAAG CATGCCGAGT
ATTATGGGGT TTGTATCATT GGCGGGGATA GTTGTGAACG ATTCTATTTT GTTAGTGCAA
TACATTCGAC ATCATGTGGA TGAGGGTGAT TCCGTGTATG AAGCGGTCGT AAAAGCCAGC
CAAGAACGGT TTAGAGCGGT ATTTTTAACG TCAGTGACAA CGGCTGTGGG ATTATTACCT
CTGTTATTAG AAACCAGTTT GCAGGCGCAA GTTATTCAGC CTCTCGTCGT TTCTATTGTA
TTTGGTATTT TTACATCAAC GCTCTTGGTA CTCTTCATGA TCCCTGCCGC TTATGCCATC
TTGGCTGATT TTGGATTAGT GAAAAAGCAT GAAGAGTTAC ATTGA
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| Protein sequence | MIKFFARHPT AANLLMLSIL LLGVVSLSQL KRETFPEFSP PYILAGVVYP GASPQEVEES
ICIRLEDAVD GLGNIEETKC EAIEGSARLV IKLNAKADIG RMLVDVQTQI DSINDFPKEI
ESPIVQELDW NEPVVDVAIT ADTTWPELKA YAEKLKQSLK LDYDVSLVEV SGFSDHQYRV
ELDEGAIRQL GLNVSDIANK LAEQNVKLPS GSIETPEKNF LIRFDERKTT PQELAKTVMG
ASANGALIRL GDIATITDRF ELDEQKVLFD GKPSALLKIS KNKEEDALRI KDRVTEFVKY
QQSVAPDGVA LEMTNDLSSL LWDRLTMMVK NGWQGIILVF LTMWLFFTFR YSFWVAAGLP
VAFLGGLFLM ASFGLSINIM SLVALLMAIG IMMDDAIVIA ESIASHLDRG QEIDDAVYNG
VKKVFPGVLS SFLTTVCIFG SLMFLQGEMG AVLKVIPQVL ILVLSLSLIE AFLILPNHLS
HSLHKAKKDK PISGIKKIVL DRFEHFRNVT LVKAVTKVVE WRYAFLGAVI ASLLISFSLI
SGGALKFVGF PELDGDIAEA RIILPPGTSL SQTEIVVDKI VSAAEKLNKE WCDNNEDGRP
LVEHITQQFN TNADASESGP HLATIRLDLL GAEERTTLID DFIDAWREEV GDLAEPITMV
YKQPTMGPGG RAIEIRMMDD DLHTLKSASL EVQAYLNEFS GVYGVLDDMR MGKEEVLVKL
RPGAETYGVT GQLIANQLRA AYFGQTADEI QLGVENIEIE VRLNKEQAGD LHTLENFPII
MPDGSQIPLA SIATLDFQRN YVRIQRINGL RTLSVFGDVH ASQVSSSEIL AQFRSELAPA
LQNKYPRLRF DFEGEAKDTA ETGQSMGTGF MLGLFGVFVI LSFQFRSYLE PFVVMLAIPL
ALIGVLWGHV LLGHPLSMPS IMGFVSLAGI VVNDSILLVQ YIRHHVDEGD SVYEAVVKAS
QERFRAVFLT SVTTAVGLLP LLLETSLQAQ VIQPLVVSIV FGIFTSTLLV LFMIPAAYAI
LADFGLVKKH EELH
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