| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0352 |
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| Symbol | rapA |
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| ID | 6989290 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 384295 |
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| End bp | 387204 |
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| Gene Length | 2910 bp |
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| Protein Length | 969 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 643378731 |
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| Product | ATP-dependent helicase HepA |
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| Protein accession | YP_002261884 |
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| Protein GI | 209693956 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCATTTG CTTTGGGCCA ACGTTGGATT AGTGATACAG AAAGTGATTT GGGTTTAGGA
ACAGTGGTTG CTGTTGACGA TAGAACCGTC TCTGTCCTTT TTGCCGCATC AGAAGAAAAT
CGTTTATACG CAAAACATGA TGCACCTATT ACTCGAGTGA CGTTCAATAA GGGCGATACA
ATTGAAAGTC ACGAAGGTTG GTCACTTGAA GTCGAAGATG TTATTGAAGA CGGTGGACTA
TTAACGTACA TCGGAACTCG TACAGATACG GATGAAGTGA ACGTTGTTCT TCGTGAAACG
TTATTAAGTC ATCAGATCCG TTTTAATAAA CCTCAAGATA AGTTATTTGC AGGCCAAATT
GATCGTATGG ATCGCTTTGC ATTGCGTTTT CGTGCACTTC AAAACCAGTA TGAGCAACAT
AAAAACCCAA TGCGTGGTTT ATGTGGTATG CGTGCAGGTT TGATCCCACA TCAGTTATTC
ATTGCTCATG AAGTAGGGCG TCGTTATGCC CCTCGTGTTT TATTGGCAGA TGAAGTCGGT
TTAGGTAAAA CGATTGAAGC GGGTATGATT ATTCATCAGC AAGTGCTTTC TGGTCGTGCT
GAGCGTGTAT TGATTGTTGT TCCTGAAACA CTACAACATC AATGGCTTGT TGAAATGATG
CGTCGTTTTA ATCTTCATTT TTCTATTTTT GATGAAGAGC GTTGTATTGA GTCGTATGCG
GATTCTGAAA ATCCATTCGA TACCGCGCAA TTAGTGTTGT GTTCATTGGA TTTTATTCGC
AGAAGTAAGC GTCGTTTTGA GCAAGTGGTT GAAGCCGATT GGGATCTTCT TGTTGTTGAT
GAAGCGCATC ACCTTGAATG GAACCAAACA AAACCAAGCC GTGCATATCA AGTTATTGAA
GCGATTGCAG AAGAAACGGC GGGTGTTTTG CTGCTAACGG CAACACCTGA ACAATTAGGT
CACGAAAGTC ACTTTGCTCG TCTGCGTCTA TTAGATCCAG ATCGTTTCTA TGATTACGAT
GCGTTTGTTG AAGAAGAGCG CCAATATCAG CCAGTTGCTG ATGCGGTTAC CGCGTTGATG
AGTGGCGATA AATTATCAAA CGACGCGAAG AATCGTATTG CTGAATTGCT TTCAGAGCAA
GACGTAGAGC CATTGTTTAG AATTATTGAA TCTGATGGTT CTGAAGAACA GCAAAGCCAA
GTACGTCAAG AATTAGTCGA TAACTTAATG GACCGTCATG GTACTGGTCG TGTGCTATTC
CGTAATACAC GTGCGGCAAT TAAAGGGTTC CCACAACGTA ATCTCAATTT AATGCCAATG
GCGTTACCAC CACAATACGC AACCTCTATG CGTGTAGCGA CAATGATGGG TGGTCGCATG
AGTAATGAAG CTCGTGCAAT GAAAATGTTG TATCCAGAAG AGATCTTCCA AGAATTTGAA
GGCGATAGTG CAACGTGGTG GCAGTTTGAT CCTCGCGTTA ACTGGTTACT TGAATTGCTG
AAAGAAAACC GTAACGAGAA AGTATTAATC ATCGCTTCTC GAGCTTCAAC GGCGTTGCAA
CTAGAGCAAG CGTTACGTGA ACGTGAGGGT ATTCGTGGTA CTGTTTTCCA TGAAGGGATG
TCGATTATTG AGCGAGATAA AGCCGCTGCT TACTTTGCAC AAGAAGAAGG TGGCGCTCAG
GTTCTTATCT GTTCTGAAAT TGGTTCAGAA GGACGTAACT TCCAGTTTGC TAATCAATTA
GTGATGTTTG ATTTACCTTT CAATCCTGAC TTACTTGAGC AACGTATTGG TCGTTTGGAT
CGTATTGGTC AAAAGCGTGA TATTGATATT CATGTTCCTT ATTTGCAAGG TACATCTCAA
GAATTATTAG CGCGTTGGTT TGACGAAGGG TTGAATGCTT TTGGTGAAAC GTGCCCAACA
GGTCGCGCTG TGTACGAAAA ATTCTCTGAT ACGATCATTG CGATTTTGGC TACGGGTAAA
TCAGATGGAT TAGAGCCACT GATCGAAGAA TCCGCGGCAC TAAACAAAGA ATTAAAAGCG
CAGTTAGAGC AAGGTCGAGA TCGTTTGTTA GAAGTGCATT CAAACGGTGG CAATAAAGCG
AAAGAACTTG CAGAGAAAAT TGCTGCGACA GACGGTGACA TACATCTGGT TAATTTTGCT
TTGAACCTGT TCGATACGAT TGGTTTGAAT CAAGACGACA AAGGTGAAAA CGCCATTGTT
GTTACGCCAG CTGAAAATAT GTTGGTATCA AGTTACCCCG GTCTTCCTTA TGAAGGTTGT
ACGATTACGT TTGATCGTAA AACGGCTCTT TCTCGTGAAG ACATGAACTT GATCAGCTGG
GAACACCCAA TGATCCAAGG GGGAATTGAT TTAGTTCTGA CTGAAGGCGT AGGTGCAACT
GCAGTGTCTT TATTGAAAAA TAAAGCCTTA CCAGCGGGTA CTCTATTGCT TGAATTGATT
TATGTGGTAG ATGCACAAGC GCCTAAGAAA AGTGGCATAG GACGATTCTT ACCGAAGACG
CCTATTCGTT TGATGATGGA CAGTAAAGGT AATGATCTTT CTGCTCAAGT TGAATTTGAA
AGCTTCAACC GTCAGCTAAG TCCTGTTAAT CGTCATATGG CGAGTAAATT AGTGAATTCA
GTGCAAAAAG AAATTCATGC ATTGATTGAT ACGGCAGAAG TTAGCATTGA AGACCGAATT
GAAGCCGTTC GTGTTGATGC GAATGCTGAG ATGAAAACGG CGTTAAATGG GGAATTAGAT
CGTTTACAAG CATTAAAGGC CGTAAATCCA AACATACGAG ATGAAGAGTT AACTCAGATC
GAAACTCAAA TGAGTGAACT TTCTGCGTAT ATTGGAAAAG CACAGGTACA GCTTGATTCA
TTGCGTTTGA TTGTTGTGAG CCATAACTAA
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| Protein sequence | MSFALGQRWI SDTESDLGLG TVVAVDDRTV SVLFAASEEN RLYAKHDAPI TRVTFNKGDT
IESHEGWSLE VEDVIEDGGL LTYIGTRTDT DEVNVVLRET LLSHQIRFNK PQDKLFAGQI
DRMDRFALRF RALQNQYEQH KNPMRGLCGM RAGLIPHQLF IAHEVGRRYA PRVLLADEVG
LGKTIEAGMI IHQQVLSGRA ERVLIVVPET LQHQWLVEMM RRFNLHFSIF DEERCIESYA
DSENPFDTAQ LVLCSLDFIR RSKRRFEQVV EADWDLLVVD EAHHLEWNQT KPSRAYQVIE
AIAEETAGVL LLTATPEQLG HESHFARLRL LDPDRFYDYD AFVEEERQYQ PVADAVTALM
SGDKLSNDAK NRIAELLSEQ DVEPLFRIIE SDGSEEQQSQ VRQELVDNLM DRHGTGRVLF
RNTRAAIKGF PQRNLNLMPM ALPPQYATSM RVATMMGGRM SNEARAMKML YPEEIFQEFE
GDSATWWQFD PRVNWLLELL KENRNEKVLI IASRASTALQ LEQALREREG IRGTVFHEGM
SIIERDKAAA YFAQEEGGAQ VLICSEIGSE GRNFQFANQL VMFDLPFNPD LLEQRIGRLD
RIGQKRDIDI HVPYLQGTSQ ELLARWFDEG LNAFGETCPT GRAVYEKFSD TIIAILATGK
SDGLEPLIEE SAALNKELKA QLEQGRDRLL EVHSNGGNKA KELAEKIAAT DGDIHLVNFA
LNLFDTIGLN QDDKGENAIV VTPAENMLVS SYPGLPYEGC TITFDRKTAL SREDMNLISW
EHPMIQGGID LVLTEGVGAT AVSLLKNKAL PAGTLLLELI YVVDAQAPKK SGIGRFLPKT
PIRLMMDSKG NDLSAQVEFE SFNRQLSPVN RHMASKLVNS VQKEIHALID TAEVSIEDRI
EAVRVDANAE MKTALNGELD RLQALKAVNP NIRDEELTQI ETQMSELSAY IGKAQVQLDS
LRLIVVSHN
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