| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0336 |
|---|
| Symbol | rplR |
|---|
| ID | 6989151 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 371225 |
|---|
| End bp | 371578 |
|---|
| Gene Length | 354 bp |
|---|
| Protein Length | 117 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 643378713 |
|---|
| Product | 50S ribosomal protein L18 |
|---|
| Protein accession | YP_002261868 |
|---|
| Protein GI | 209693940 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0256] Ribosomal protein L18 |
|---|
| TIGRFAM ID | [TIGR00060] ribosomal protein L18, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000887363 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAGA AAGCATCTCG CATCCGTCGT GCTACACGTG CACGTCGTAA GATCGCTGAA
CTGTGTGCAA CTCGCCTTGT AGTGCATCGT ACTCCGCGTC ATACGTATGC TCAGGTAATC
GCACCAAACG GCTCAGAGGT TATCGCTGCC GCTTCTACTG TAGAAAAGGC AATCCGTGAG
CAAGTTGGAA ATACTAGTAA CAAAGCAGCT GCTGTAGCAA TTGGTAAATT AATTGCTGAG
CGCGCTATCG AAAAAGGCAT TACTAATGTT GCTTTCGATC GTTCTGGTTT CCAATACCAC
GGCCGAGTAG CGGCGCTAGC AGATTCTGCT CGCGAAGCTG GTCTGAAATT CTAA
|
|---|
| Protein sequence | MDKKASRIRR ATRARRKIAE LCATRLVVHR TPRHTYAQVI APNGSEVIAA ASTVEKAIRE
QVGNTSNKAA AVAIGKLIAE RAIEKGITNV AFDRSGFQYH GRVAALADSA REAGLKF
|
|---|
| |