Gene VSAL_I0335 details

Gene Information

• Locus tag: VSAL_I0335
• Symbol: rplF
• ID: 6989195
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 370682
• End bp: 371215
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 643378712
• Product: 50S ribosomal protein L6
• Protein accession: YP_002261867
• Protein GI: 209693939
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.000240759
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTCGTG TTGCTAAAGC ACCTGTGGTT CTTCCTGCTG GCGTAGAAGT TAAACTGAAC 
GGCCAGGAAA TCACTATCAA AGGTGGTAAA GGTGAACTAA CTCGCGTACT TAATAACGCT 
GTAGTTGTTT CACAAGAAGA TAACTCTATT GTATTTGGTC CACGCGAAGG CGTTGCCAAT 
GCTTGGGCAC AAGCTGGTAC AGCTCGTGCA CTAGTAAACA ATATGGTTGT TGGTGTTAAT 
GAAGGCTTTA CTAAGAAGCT AACTCTTAAA GGTGTAGGTT ACCGTGCTAC CATGAAAGGT 
AACGCAGTAG GCCTTACTCT TGGCTTCTCA CATCCTGTTG AGCATGCTCT TCCGGAAGGT 
ATTAAAGCTG AATGTCCAAC TCAAACTGAG ATCATTATTA CTGGTTGCGA TAAGCAAGTA 
GTAGGTCAAG TTGCTGCGGA TATTCGTTCA TACCGTAAAC CTGAGCCTTA TAAAGGCAAA 
GGTGTTCGTT ACGCCGATGA AATCGTGCGT ACTAAAGAAG CTAAGAAGAA GTAG 

 

Protein sequence

MSRVAKAPVV LPAGVEVKLN GQEITIKGGK GELTRVLNNA VVVSQEDNSI VFGPREGVAN 
AWAQAGTARA LVNNMVVGVN EGFTKKLTLK GVGYRATMKG NAVGLTLGFS HPVEHALPEG 
IKAECPTQTE IIITGCDKQV VGQVAADIRS YRKPEPYKGK GVRYADEIVR TKEAKKK