Gene VSAL_I0320 details

Gene Information

• Locus tag: VSAL_I0320
• Symbol: rplC
• ID: 6989197
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 363881
• End bp: 364510
• Gene Length: 630 bp
• Protein Length: 209 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 643378697
• Product: 50S ribosomal protein L3
• Protein accession: YP_002261852
• Protein GI: 209693924
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.0285067
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTGGTC TAGTCGGTCG TAAAGTGGGC ATGACCCGCA TCTTTACCGA AGAAGGCGTT 
TCTATCCCAG TAACTGTTGT TGAAGTTGAA GTTAACCGTG TTTCTCAAGT GAAAACTGTA 
GAAACTGATG GCTACAACGC AATTCAAGTT ACTTGTGGTT CTAAGAAAGC TAACCGCGTA 
TCTAAGCCTG AAGCTGGTCA CTTTGCGAAA GCAGGTGTTG AAGCAGGTCG CGGTCTTTGG 
GAATTCCGTT TAGAAAACGG TGAAGAATTC ACAGTTGGCG CTGAGCTAAG TGTTGAAATC 
TTTAACGAAA TCAAAAAAGT AGACGTTACT GGTACATCTA AAGGTAAGGG CTTCCAAGGC 
GCAATTAAGC GTTGGAACTT CGCTACTCAA GATATGACTC ACGGTAACTC TTTGTCTCAT 
CGTGCTCCGG GTTCAATTGG CCAATGTCAA ACTCCAGGTC GCGTATTTAA AGGCAAAAAA 
ATGGCGGGTC ACATGGGTGC TGAGCGTTGT ACTACTCAAA ACTTAGAGAT CGTACGTGTT 
GACGCTGAGC GCAATCTGCT TCTTATTAAA GGTGCAGTAC CAGGCTCAAC AGGTGGCAAC 
GTGATCGTTA AACCAGCTGT TAAAGCATAA 

 

Protein sequence

MIGLVGRKVG MTRIFTEEGV SIPVTVVEVE VNRVSQVKTV ETDGYNAIQV TCGSKKANRV 
SKPEAGHFAK AGVEAGRGLW EFRLENGEEF TVGAELSVEI FNEIKKVDVT GTSKGKGFQG 
AIKRWNFATQ DMTHGNSLSH RAPGSIGQCQ TPGRVFKGKK MAGHMGAERC TTQNLEIVRV 
DAERNLLLIK GAVPGSTGGN VIVKPAVKA