Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0148 |
Symbol | rho |
ID | 6989339 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 187298 |
End bp | 188557 |
Gene Length | 1260 bp |
Protein Length | 419 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 643378539 |
Product | transcription termination factor Rho |
Protein accession | YP_002261697 |
Protein GI | 209693769 |
COG category | [K] Transcription |
COG ID | [COG1158] Transcription termination factor |
TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00136527 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCTTA CTGAACTTAA AAACAGACCA GTGTCTGACC TTGTTGCTCT TGGCGAATCA TTAGGCCTAG AAAACCTAGC TCGTCTAAGA AAACAAGACA TCATCTTCTC CATCCTTAAG CAACATGCGA AAAGCGGTGA AGACATCTTT GGAGATGGTG TACTTGAGAT TCTTCAAGAT GGCTTTGGTT TCCTTCGTTC AGCAGATTGT TCTTACTTGG CTGGCCCGGA TGACATCTAT GTCTCTCCAA GCCAAATTCG TCGCTTTAAC TTGCGTACTG GTGATACGAT TGGCGGAAAG ATTCGTCCAC CAAAAGATGG CGAACGTTAT TTCGCTCTTC TTAAAGTAAA CGCTGTTAAT TATGATCGCC CAGATAATGC TCGTAACAAA ATCCTTTTTG AAAACCTTAC CCCTTTACAC GCAAACGATC GTTTACGTAT GGAACGTGGT AATGGTTCAA CAGAAGATAT TACGGCGCGT ATTCTTGATT TAGCTTCTCC AATTGGCCGT GGTCAACGTG GTCTGATTGT TGCTCCGCCA AAAGCGGGTA AAACAATGCT ACTTCAAAAC ATCGCTCAAA GTATTGCTCA CAACTACCCA GAATGTGAGT TGATGGTTCT ACTTATCGAT GAACGTCCAG AAGAAGTAAC TGAGATGCAA CGCCTTGTTA AAGGTGAAGT AATTGCGTCT ACGTTTGATG AGCCAGCGTC TCGTCACGTA CAAGTTGCTG AAATGGTTAT CGAGAAAGCG AAACGTCTTG TAGAGCATAA AAAAGACGTG GTTATCCTAT TGGATTCAAT TACTCGTCTT GCTCGTGCAT ACAACACCGT TATTCCATCA TCAGGTAAAG TTCTTACTGG TGGTATTGAT GCAAACGCAT TACACCGCCC TAAACGCTTT TTTGGTGCAG CACGTAACGT TGAAGAAGGT GGCAGTTTAA CTATCATTGC AACGGCACTT GTTGATACCG GCTCTAAAAT GGATGAAGTT ATCTACGAAG AGTTTAAAGG TACGGGTAAC ATGGAATTGC ATTTAAACCG TAAAATTGCG GAAAAACGTA TATTCCCAGC GATTGACTTT AATCGTTCTG GTACTCGTCG TGAAGAGTTG CTAACTAAGA CTGATGAATT ACAGAAAATG TGGATCCTAC GTAAGATTGT TCATCCAATG GGTGAAAGTG ATGCGATGGA ATTCCTAATT GATAAACTAT CAATGACAAA AACGAACAAT GAGTTCTTTG ACGCGATGCG TCGCCAGTAA
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Protein sequence | MNLTELKNRP VSDLVALGES LGLENLARLR KQDIIFSILK QHAKSGEDIF GDGVLEILQD GFGFLRSADC SYLAGPDDIY VSPSQIRRFN LRTGDTIGGK IRPPKDGERY FALLKVNAVN YDRPDNARNK ILFENLTPLH ANDRLRMERG NGSTEDITAR ILDLASPIGR GQRGLIVAPP KAGKTMLLQN IAQSIAHNYP ECELMVLLID ERPEEVTEMQ RLVKGEVIAS TFDEPASRHV QVAEMVIEKA KRLVEHKKDV VILLDSITRL ARAYNTVIPS SGKVLTGGID ANALHRPKRF FGAARNVEEG GSLTIIATAL VDTGSKMDEV IYEEFKGTGN MELHLNRKIA EKRIFPAIDF NRSGTRREEL LTKTDELQKM WILRKIVHPM GESDAMEFLI DKLSMTKTNN EFFDAMRRQ
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