Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0098 |
Symbol | |
ID | 6986311 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 132347 |
End bp | 133927 |
Gene Length | 1581 bp |
Protein Length | 526 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 643378491 |
Product | transporter, BCCT family |
Protein accession | YP_002261649 |
Protein GI | 209693721 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1292] Choline-glycine betaine transporter |
TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAGAA ATAAGGATAA GTACAGTATA GATAACACGG ATTATACTGT TGGACAGGAT AACGTTCAAA AATGGGGATT GGATATTCAT AATACCGTCT TCGGCATTAG TGCTGGTTTA ATTGCACTCT TCTTAATTGC GGTTGCAGTG ACTGATCCAG AAACCGCTAA GACGGTTCTA AATGGTTTAA AATCACAAAT TATCAATGCA TTTGATGGTT TGTTTATGTG GTCTGCGAAT ATCTTTGTGG TTTTCTGCTT AGCATTAATT GTGTCTCCAT TCGGTAAGAT CCGCCTTGGT GGTGATAAAG CGAAACCCGA TTATTCGATG ATCTCTTGGA TTGCGATGTT ATTTGCTGCG GGCATGGGCA TCGGTCTTAT GTTCTGGGGG GTTGCTGAAC CTGTTGCTTA CTTTACCGGT TGGTTTGGAA CGCCGTTAGG TGTTGAAGCT TATACTCCAG AAGCAAGGCA ACTCGCGCTT GGTGCGACCA TGTTCCACTG GGGTATTCAC CCGTGGGCTA TTTATGGTGT CGTTGCTTTA TCACTGGCCT TCTTTTCTTA CAATAAAGGC TTACCGCTTT CTATGCGTTC AATCTTCTAT CCAATTTTAG GGGATCGTAC ATGGGGGTGG CCTGGTCACA TTGTTGATAT TCTTGCCGTT CTTGCTACCT TATTTGGTCT TGCGACTTCT CTAGGTCTTG GTGCACAACA AGCAGCAAGT GGCTTCCAGC ATGTGTTTGG TATTGAAGGT GGCTTAGGTT TACAAGTTGC GATTATTTTC ATTGTTACGT TACTTGCCGT TGTGTCGGTA ATGCGCGGTA TTGATGGTGG CGTAAAAATT ATCAGTAATA TCAATATGAT CATTGCGATA GTGTTTGTTG TTTTTGTTGC TTTAGTTACC TTTGCGGTTT CTATGGGGGC GATCCCAACA ACGATCATGG GTTATATTGA AAATATTATT CCATTGAGTA ATCCAAGTGG TCGTGATGAT GAAGCGTGGA TGCACGGTTG GACAGTGACT TACTGGGCGT GGTGGATTTC ATGGTCTCCA TTTGTTGGTA TGTTTATCGC TCGAGTATCT CGTGGTCGTA CGGTTCGTGA GTTCTTGATT GCGGTATTAG TGGTTCCAAC TGTCTTTACT GTGCTGTGGA TGTCTACTTT TGGTGGCGTT GCGATTGATC AAGTGATGAA TAATGTGGGT ACATTGGGGA CTGATGGATT AACCGACGTC TCTCTGGCGA TGTTCCAAAT GTTTGATGCT CTGCCTATGG GTAATGTTTT ATCTATGATT GCTGTTGTTC TGGTGTTGGT CTTCTTTATT ACCTCATCGG ATTCAGGCTC ATTGGTTATC GATAGTATTA CCGCTGGTGG TAAAGTTGAT GCGCCAATTC CACAACGTGT TTTTTGGGCG TTCATGGAAG GGGCAATTGC CGTTGCTCTA TTATGGGTAG GTGGAACACA AGCGGTTGAA GCGCTTCAAG CAGGTGCGAT TTCTACCGCA CTGCCGTTTA CCATTATTCT ATTAGTGATG TGTGTCAGTT TGCTTATGGG CATGAGAACA GAGAAACATA ATCGTTCTTA A
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Protein sequence | MSRNKDKYSI DNTDYTVGQD NVQKWGLDIH NTVFGISAGL IALFLIAVAV TDPETAKTVL NGLKSQIINA FDGLFMWSAN IFVVFCLALI VSPFGKIRLG GDKAKPDYSM ISWIAMLFAA GMGIGLMFWG VAEPVAYFTG WFGTPLGVEA YTPEARQLAL GATMFHWGIH PWAIYGVVAL SLAFFSYNKG LPLSMRSIFY PILGDRTWGW PGHIVDILAV LATLFGLATS LGLGAQQAAS GFQHVFGIEG GLGLQVAIIF IVTLLAVVSV MRGIDGGVKI ISNINMIIAI VFVVFVALVT FAVSMGAIPT TIMGYIENII PLSNPSGRDD EAWMHGWTVT YWAWWISWSP FVGMFIARVS RGRTVREFLI AVLVVPTVFT VLWMSTFGGV AIDQVMNNVG TLGTDGLTDV SLAMFQMFDA LPMGNVLSMI AVVLVLVFFI TSSDSGSLVI DSITAGGKVD APIPQRVFWA FMEGAIAVAL LWVGGTQAVE ALQAGAISTA LPFTIILLVM CVSLLMGMRT EKHNRS
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