| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0089 |
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| Symbol | |
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| ID | 6986303 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 117758 |
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| End bp | 120826 |
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| Gene Length | 3069 bp |
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| Protein Length | 1022 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 643378478 |
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| Product | putative integral membrane component of multidrug efflux system |
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| Protein accession | YP_002261641 |
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| Protein GI | 209693713 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCTTTA CTGATGTTTT CATTAAACGT CCAGTTTTAG CGGTATCGAT CAGCTTTTTG
ATTGCTTTGC TTGGTATCCA AGCTATTTTC AAAATGCAGG TTCGTGAATA CCCTGAAATG
ACCAATACCG TTGTAACGGT AACAACAAGC TATTACGGCG CGAGTGCTGA CCTTATTCAA
GGTTTCATAA CTCAACCCTT AGAGCAAGCG GTAGCACAAG CCGATAATAT TGATTTCATG
ACCTCTCAAT CAGTAATGGG GCAATCGACC ATTACTGTTA CTATGAAATT AAATACGGAC
CCGAATGCTG CCCTCTCCGA TATATTAGCC AAGACTAACT CGGTGCGTTC TCAGCTTCCA
AAAGAAGCGG AAGATCCAAC GGTTACTATG TCGACAGGTT CAACTACCGC GGTGTTATAT
ATCGGCTTTA CCAGTGATGA ACTTGCCTCA AGTCAAATCA CCGATTATTT AGAACGCGTT
GTGAACCCGC AACTATTCAC CGTTAATGGC GTATCTAAAA TCGACCTATA CGGCGGTATT
AGATATGCAT TACGTATCTG GTTAGAACCA GCACGTATGG CTGCAGTAAA TATGACAGCA
ACAGATGTTA TGAGCGTATT AAATGCCAAT AACTTTCAGT CAGCAGCAGG CCAAGCAACC
GGTGAATTCG TTCTTTATAA TGGTAGCGCA AATACTCAAG TCTCGAATGT AGAGGAGCTT
GAGCGTTTAG TTATTAAAAC AGACGATGGT GAAGTGGTTC GCCTAAGTGA TATTGCTAAG
GTATCTTTAG AAAAGAGTCA TGATATATAC CGTGCAAGTG CAAACGGCAA AGAAGCCGTA
GTTACTGCAA TCAATGCCGC ACCAAGTGCC AACCCAATTA ACATTGCGGC TGATGTATTG
AAGCTTTTAC CTCAATTAGA GAAAAACCTT CCAACAAACA TCAAAATGAA CATCATGTAC
GATTCAACGA TTGCGATTAA TGAATCTATC CATGAAGTTA TTAAGACTAT TGTTGAAGCT
GCGGTCATCG TACTTATCGT TATTACCTTA TTCTTAGGCT CATTCCGAGC GGTTATCATT
CCTATTGTCA CCATTCCTCT ATCACTTGTT GGTGTTGCAA TGGTAATGCA AGTCATGGGC
TTCTCATGGA ACCTAATGAC TCTTCTCGCT ATGGTATTGG CCATCGGGCT TGTTGTTGAT
GATGCCATCG TTGTATTAGA AAACGTAGAT AGGCACGTTA AGCTTGGAGA AACCCCGTTT
AGGGCCGCTA TTATTGGTAC GCGTGAAATC GCAATTCCGG TAATTGCAAT GACTCTAACG
CTGGGCGCGG TATATGCTCC TATCGCGATG ATGGGTGGTA TTACGGGTTC ATTGTTTAAA
GAGTTTGCTT TAACGCTCGC AGGTTCAGTA TTTGTTTCAG GGATAGTCGC GTTAACATTA
TCTCCAATGA TGTGTTCTAA AATGCTGAAA GCAAATGAAG TACCAAGCAA ATTTGAAAGC
ACAGTTCATC ATTTCCTTGA TGGTATGACG AATAAATATG AACGTATTCT TGGCTCGGTA
ATGCAGCATC GACCAGTAAT CATTGCATTT GCTGTCATCG TTTTTGCAAG CTTGCCATTA
CTATTTAAGT TCATACCAAG TGAACTTGCT CCTTCAGAAG ATAAAGGAGT GGTAATGCTT
ATGGGTACAG GTACATCTAA CGCTAACTTA GATTACTTAC AAAACACAAT GAATGATGTA
AATAAGATTC TTTCAGATCA ACCTGAAATA GCCTTTGCTC AAGTATTCAC CGGTGTTCCA
AACTCGAACC AAGCCTTTGG TATTGCATCA ATGGTTCCTT GGAGCCAACG AGAAGCAAGC
CAAGCAGAAG TAACAGATCG TGTTGGTAAA TTAGTACAAA ATGTCCCAGG AATGGCTGTT
ACAGCATTCC AAATGCCAGA ATTGCCTGGC GCAGGTTCAG GTTTACCAAT TCAATTCGTA
ATAACGACAC CAAACAGCTT TGAGAGTCTA TTCCAAATAG CAACGGAAGT ATTAACTGAA
GTGAAAGGAA GCCCTCTATT TGTTTATTCT GATATCGATT TGAATTTTGA TTCTGCAACA
ATGAAAATCA ATATCGATAA AGATAAAGCG GGTGCTTACG GTGTGACAAT GCAAGACATT
GGTATTACGC TAAGTACGAT GATGGCTGAT GGCTATGTAA ACCGTATCGA TCTCAATGGT
CGTTCTTACG AGGTAATTCC ACAAGTAGAA CGTAAATTCC GCTTAAACCC TGAATCAATG
AATAATTATT ACGTTCGTTC AGCAAGCGGG GAAGCAGTTC CATTAGGAAG CTTAATTGCG
ATTGATGTTA TTGCAGAGCC GAGATCTCTA CCTCACTTCA ATCAGCTAAA TTCAGCTACC
GTAGGTGCTG TACCATCACC AGGTGTGGCA ATGGGTGATG CTATTTCTTG GTTCGAAAAT
ATTGCAAATA GCAAATTGCC AAGTGGGTAC AACCATGATT ATATGGGCGA AGCTCGACAA
TATGTGACAG AAGGTAGCGC ATTATACGCT ACATTTGGTT TAGCATTGGC TATCATCTTC
CTAGTACTTG CGATTCAATT TGAATCAATT CGAGATCCAT TAGTTATCAT GGTTTCTGTA
CCTCTTGCTA TTTGTGGTGC TTTGATTGCC CTCGCATGGG GCGCTGCTAC AATGAACATC
TACTCACAAG TAGGGTTAAT CACTCTCGTT GGCTTGATTA CCAAACATGG TATTTTGATT
TGTGAAGTAG CAAAAGAAGA ACAATTGCAT AATCTAAAAA ATCGCGTTGA AGCGGTAACA
GAAGCTGCAA AAGTTCGTCT TCGTCCAATC CTAATGACAA CAGCGGCAAT GATTGCGGGT
TTAATCCCGT TAATGTATGC CACTGGTGCA GGTGCTGCAC AGCGCTTTAG TATTGGTATT
GTTATTGTTG CAGGTTTAGC TATTGGTACT CTATTTACGT TATTCGTATT ACCCGTAATT
TATAGTTACC TAGCAAGTGA GCATAAACCT TTACCAGAGT TTGAAGAAGG GAAAGAAATT
CAAGAGTAA
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| Protein sequence | MRFTDVFIKR PVLAVSISFL IALLGIQAIF KMQVREYPEM TNTVVTVTTS YYGASADLIQ
GFITQPLEQA VAQADNIDFM TSQSVMGQST ITVTMKLNTD PNAALSDILA KTNSVRSQLP
KEAEDPTVTM STGSTTAVLY IGFTSDELAS SQITDYLERV VNPQLFTVNG VSKIDLYGGI
RYALRIWLEP ARMAAVNMTA TDVMSVLNAN NFQSAAGQAT GEFVLYNGSA NTQVSNVEEL
ERLVIKTDDG EVVRLSDIAK VSLEKSHDIY RASANGKEAV VTAINAAPSA NPINIAADVL
KLLPQLEKNL PTNIKMNIMY DSTIAINESI HEVIKTIVEA AVIVLIVITL FLGSFRAVII
PIVTIPLSLV GVAMVMQVMG FSWNLMTLLA MVLAIGLVVD DAIVVLENVD RHVKLGETPF
RAAIIGTREI AIPVIAMTLT LGAVYAPIAM MGGITGSLFK EFALTLAGSV FVSGIVALTL
SPMMCSKMLK ANEVPSKFES TVHHFLDGMT NKYERILGSV MQHRPVIIAF AVIVFASLPL
LFKFIPSELA PSEDKGVVML MGTGTSNANL DYLQNTMNDV NKILSDQPEI AFAQVFTGVP
NSNQAFGIAS MVPWSQREAS QAEVTDRVGK LVQNVPGMAV TAFQMPELPG AGSGLPIQFV
ITTPNSFESL FQIATEVLTE VKGSPLFVYS DIDLNFDSAT MKINIDKDKA GAYGVTMQDI
GITLSTMMAD GYVNRIDLNG RSYEVIPQVE RKFRLNPESM NNYYVRSASG EAVPLGSLIA
IDVIAEPRSL PHFNQLNSAT VGAVPSPGVA MGDAISWFEN IANSKLPSGY NHDYMGEARQ
YVTEGSALYA TFGLALAIIF LVLAIQFESI RDPLVIMVSV PLAICGALIA LAWGAATMNI
YSQVGLITLV GLITKHGILI CEVAKEEQLH NLKNRVEAVT EAAKVRLRPI LMTTAAMIAG
LIPLMYATGA GAAQRFSIGI VIVAGLAIGT LFTLFVLPVI YSYLASEHKP LPEFEEGKEI
QE
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