Gene VSAL_I0077 details

Gene Information

• Locus tag: VSAL_I0077
• Symbol: smf
• ID: 6986298
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 80351
• End bp: 81460
• Gene Length: 1110 bp
• Protein Length: 369 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 643378440
• Product: Smf protein
• Protein accession: YP_002261629
• Protein GI: 209693701
• COG category: [L] Replication, recombination and repair; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0758] Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake
• TIGRFAM ID: [TIGR00732] DNA protecting protein DprA

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.64141
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTAACT CAGATAAACA CTTATCTGCA TGGTTAACTC TGTGCTTTTG TCCTCGAATT 
GGTGGGAAGG TAATGTCTCG CCTACTTGCC ATTGATTCTG TTGAAAATAT TGTAAAGTAC 
GATAAGGATA AATTGCAATC GATAGGGCTT TCTTGTGCGC AAATTGCTTA CATCCAGGCT 
GTGAATCATG AAGAAGTAGA TAAATGCTTA TTGTGGGAAG ATGGAGATTC TCTTAATACC 
ATTTTAACGT TATCTGATCC TCGCTATCCG AAGTTATTAT CTGAAATAAG CGCCCCGCCG 
CCAGTATTAT TTGTTAAAGG TGATGTTTTG GCGCTATCTG AACCTCAAGT GGCTATTGTC 
GGTAGCCGTA ATGCTAGCCT AGAAGGTTTA GAATGTGCGA AGCAATTTGC GGCTTCCATT 
GTGCAGCATA ATTATGTCGT TACTAGTGGT TTAGCTCTAG GGGTTGATGG ATACGCCCAT 
CATGGGGCGA TTGAAGCGAA AGGACAAACT ATTGCAGTAC TTGGTTCTGG GTTAAACAAG 
GTATATCCAG CAAAACACAG AACGCTGGCT GATCGTGTGA TTCATAATGG GGCTTTAGTT 
TCTGAGTTTA GGCCAGATTC TCCCCCACGA GCGGACAATT TTCCTCGTCG AAATCGCATT 
ATTAGTGGGT TATCTACCGG GGTACTCGTT GTGGAAGCGG CTGAACGTTC TGGTTCTTTG 
ATTACTGCAA GGTATGCGAA TGAGCAAGGG CGAGAAGTGT TTGCTTTACC GGGATCAATA 
CATAACCCTA CAGCTCAAGG TTCTAATTCT TTAATTAAAG CCGGTGCAAA GCTGGTTTCG 
TCACCGGAAG ACATTTTTGA AGAGATCGGA GCATTAACCT ATTGTGCAAT CTCTCATCAA 
CCTTCGCTTT TTGAGCAAGA AGTTGTCACA GAACAATTGC CATTTCCCAA AGTGTTCGCT 
ACCGTAGGCA TAGAGGCGAC GCCTGTTGAT ATAATAGCAG AGCGATGTCA GACGCCTGTA 
CATGAAATCA TGATGCAATT ACTTGAATTA GAGTTGCAAG GTTTCATCAC TGCAGTCCCA 
GGGGGTTACA TTAAAAAGCG GAGGGGCTAA 

 

Protein sequence

MFNSDKHLSA WLTLCFCPRI GGKVMSRLLA IDSVENIVKY DKDKLQSIGL SCAQIAYIQA 
VNHEEVDKCL LWEDGDSLNT ILTLSDPRYP KLLSEISAPP PVLFVKGDVL ALSEPQVAIV 
GSRNASLEGL ECAKQFAASI VQHNYVVTSG LALGVDGYAH HGAIEAKGQT IAVLGSGLNK 
VYPAKHRTLA DRVIHNGALV SEFRPDSPPR ADNFPRRNRI ISGLSTGVLV VEAAERSGSL 
ITARYANEQG REVFALPGSI HNPTAQGSNS LIKAGAKLVS SPEDIFEEIG ALTYCAISHQ 
PSLFEQEVVT EQLPFPKVFA TVGIEATPVD IIAERCQTPV HEIMMQLLEL ELQGFITAVP 
GGYIKKRRG