Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0008 |
Symbol | |
ID | 6986250 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 6380 |
End bp | 7132 |
Gene Length | 753 bp |
Protein Length | 250 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 643378381 |
Product | putative amino acid ABC transporter,substrate-binding protein |
Protein accession | YP_002261570 |
Protein GI | 209693642 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00216943 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAATGGA CAAAACAAAT TCTAACCGGT TTAGCACTCA CTTTAGCGGC AACTCAATTT GCTCAAGCCG CCACTGAAGT TAAAGTTGGG ATGTCTGGTC GCTATTTCCC ATTTACCTTT GTTAAGTTGG ACAAACTGCA AGGGTTTGAA GTGGATTTAT GGGATGAAAT TGGTCGTCGT AATGACTATA AAATAGAATA TGTAACAGCG AGCTTCTCTG GCTTATTTGG TTTATTAGAA ACCGGTCGAA TTGATACCAT TTCAAATCAA ATAACAAAAA CAGAAGCACG TGAAGCAAAA TATCTATTTG CTGACCCTTA TGTTGTCGAC GGCGCTCAAA TTACCGTACG TAAAGGCAAT GAAAGCATTA AAGGCATTGA AGACCTAGCT GGTAAAACCG TTGCCGTAGA TTTAGGGTCT AACTTTGAGA AACTGTTGCG AGATAACGAC AAATCGAATC AAATTGATAT TAAAACCTAC GATACAGGCA TTGAACACGA TGTCGCTTTA GGCCGCTCGG ATGCGTTTGT AATGGATCGT CTTTCTGCTG CACAATTGAT TAAAAAATCA GGTTTGCCGC TACAACTTGC TGGCGAACCT TTTGAAACCA TTGAAAACGC TTGGCCGTTT GTAAAAAATG AAAAAGGCCA AAAACTTCAA CAAGAAGTAA ATAAAGCCCT GTCAGAAATG CGTACTGACG GTACCTTGGC TGAAATATCT CAAAAATGGT TTGATGCAGA CGTAACAAAA TAA
|
Protein sequence | MKWTKQILTG LALTLAATQF AQAATEVKVG MSGRYFPFTF VKLDKLQGFE VDLWDEIGRR NDYKIEYVTA SFSGLFGLLE TGRIDTISNQ ITKTEAREAK YLFADPYVVD GAQITVRKGN ESIKGIEDLA GKTVAVDLGS NFEKLLRDND KSNQIDIKTY DTGIEHDVAL GRSDAFVMDR LSAAQLIKKS GLPLQLAGEP FETIENAWPF VKNEKGQKLQ QEVNKALSEM RTDGTLAEIS QKWFDADVTK
|
| |