| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_p08256 |
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| Symbol | |
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| ID | 5552679 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio harveyi ATCC BAA-1116 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009777 |
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| Strand | + |
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| Start bp | 68756 |
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| End bp | 69334 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640898133 |
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| Product | pili retraction protein PilT |
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| Protein accession | YP_001436123 |
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| Protein GI | 156936772 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 79 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGACAGCGG TTGCGGGAAA AAAGGAAAGA ATTTTGAATA GGGTGTTGAA CAGAGGCTTT
ACCCTGATTG AGTTACTCAT AACAATTTGT GTTCTCAGTG TCTTACTAAT ATTTGCGGCT
CCAAGCTTTT CTAACTTGTT TGAAAGTAGT CGAATGAAAA CTGCTCAAGA CGAACTGATG
GGGTTCGTTA TCATGGCAAA AAGTGAAGCG GTATTTAGGA ACACTCCTGT TTACATTCAC
TTTAGAGAGT TGGCCAACGT AAACCCAGAC GAACGCTGCA TGGTTCTATC GTTGTCGGAT
AGCATTTCCG ACTGTACAAC AAACGTAATC TATACATTGC ATGGTCGCGT CTTTGATGGC
CTAACGTTGG AGCAAACCTA CTCACAAAAT GTGATAGAGG TTGATCCAGT AAGTGGCTGG
CCTTTGCTTA GTCACTCAAC ATTTGATAGT GAAAGTAATA GTGAACTTCT TAAATTCTTT
GCAAGAGGTG ACCAAAAGAT TGCCTTTAAA ATGCATATCA CCGGAAGAGT GAGTTTTTGT
GGTATTGGAG GGGATTGGTA TCGCACTGAG GCTTGTTAA
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| Protein sequence | MTAVAGKKER ILNRVLNRGF TLIELLITIC VLSVLLIFAA PSFSNLFESS RMKTAQDELM
GFVIMAKSEA VFRNTPVYIH FRELANVNPD ERCMVLSLSD SISDCTTNVI YTLHGRVFDG
LTLEQTYSQN VIEVDPVSGW PLLSHSTFDS ESNSELLKFF ARGDQKIAFK MHITGRVSFC
GIGGDWYRTE AC
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