| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_p08165 |
|---|
| Symbol | |
|---|
| ID | 5552771 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009777 |
|---|
| Strand | + |
|---|
| Start bp | 2969 |
|---|
| End bp | 3886 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640898042 |
|---|
| Product | DNA repair protein RadC |
|---|
| Protein accession | YP_001436032 |
|---|
| Protein GI | 156936681 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2003] DNA repair proteins |
|---|
| TIGRFAM ID | [TIGR00608] DNA repair protein radc |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 58 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGACT CAAACGTAAT CCGCTCAACC ATCACTAAGC AACCAGAACC GACCAAGTTC
TCGAATTTGG AGTCGAAGGC TGCCTCTAAA GATGAGTTTT TAAAGTCTTT TACAGGTCAT
AAGCTGCGCA AGAATGCCAA AAAGAAAATC GCTCAATTAC TTGCGTACGC GGACACCGTC
ACGCTAAAAA CGCAATCTAT GGGGATGGAT GATTGTTATC GTAGTAATGA GCCGGTATCT
ATGCCTAAAG AGGAGTTTTG GGCATGGTAC GAGCGTGAAT ATTCAGACAT GGTGATTATG
CTGACTGTTC AAGGTGACGT GCTGACAAGC GTTAAATTTA GCGACTGCAT TTATCACTTT
TCGAATGATG TGATCATGAC ATTTTCTTTG GAAGAGCGAG AGGACGAGAC AGAAAATATC
GAAGGTGGCC AAAGCTCGGT TTCTGTCGCT TATTCTGATT CTGGTTTGTT CACAGCACAT
GAGCAGGCTA TTTTAGATGA AGCAGCTGCA ATCCTTGAGT CAAAGTTGTG TATTAGTGAG
CAACCAGCTC TTAGCTCTCC TGAGGTGGTG AAGAATTTCT GTCGCTATTC TTTAGCTGCG
CGTGAGCATG AAGTGTTTGG AGTTATTTTT CTAGATAACC AGCATCGCGT GCGTTCTTCT
GAAGATCTTT TTACTGGCAC CGTTAACGCC GCTTCAGTGT ACCCTCGCGA AGTTGTCAAA
AAGGCACTAG CCGAAAACGC AAGCGCAGTT ATTTTTTATC ACAATCACCC ATCAGGTGTT
GCTGAGCCGA GCCAAGCAGA CCGTCGTATT ACGCGCCGTT TAATCGATGC ACTAGCGCTT
ATCGATGTTA AAGTACTTGA CCACTTCGTA GTCTCTTTTG AAGGTACAGT TTCATTCGCA
GAGCGTGGTT GGATTTAA
|
|---|
| Protein sequence | MTDSNVIRST ITKQPEPTKF SNLESKAASK DEFLKSFTGH KLRKNAKKKI AQLLAYADTV
TLKTQSMGMD DCYRSNEPVS MPKEEFWAWY EREYSDMVIM LTVQGDVLTS VKFSDCIYHF
SNDVIMTFSL EEREDETENI EGGQSSVSVA YSDSGLFTAH EQAILDEAAA ILESKLCISE
QPALSSPEVV KNFCRYSLAA REHEVFGVIF LDNQHRVRSS EDLFTGTVNA ASVYPREVVK
KALAENASAV IFYHNHPSGV AEPSQADRRI TRRLIDALAL IDVKVLDHFV VSFEGTVSFA
ERGWI
|
|---|
| |