| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_06429 |
|---|
| Symbol | |
|---|
| ID | 5557230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009784 |
|---|
| Strand | + |
|---|
| Start bp | 1587745 |
|---|
| End bp | 1589352 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640910902 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001448547 |
|---|
| Protein GI | 156977641 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1292] Choline-glycine betaine transporter |
|---|
| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAATG CACTAAAAAA ATATAGTATC GACACTACCG ACTATCAGGT TGGTCAAGAT
AACGTTCAAA AATGGGGATT TGATATCCAC AATCCAGTAT TCGGAATTAG TGCTGGTCTT
GTTCTTCTCT GTCTTGCTTC TCTTCTCATT GTTGACCCTG CTACTGCTCG TGACGCCTTA
AATGGTTTAA AGAACAGCAT CATTTCAGAC TTCGACTCGT TCTTTATGTG GTCAGCAAAC
TTCTTTATCT TATTCGCTAT CGCGATTCTT TTATCTCCTC TGGGTAAGAT CAGAATCGGC
GGTAAAGACG CCGTTGTGGA ACATTCAACC GTCTCTTGGT TATCGATGCT TTTCGCTGCG
GGTATGGGTA TCGGCTTGTT GTTCTGGAGT GTTTCAGAAC CAACGGCATA CTTTACCAAT
TGGTTTGGTA CCCCTCTCAA TGTAGAACCT TACACGGAAG AAGCGAAATC ACTCGCGATG
GCCGCCACCA TGTTCCACTG GGGCATCCAC GGTTGGGCGA TTTACGCCAT TGTTGCACTC
TCGCTGGCCT TCTTCGCATT CAATAAAGGT TTACCGCTTT CTCTGCGTTC TGCGTTTTAT
CCTATCTTTG GCGATCGCGC ATGGGGTTGG TTAGGCCACG TTATCGATAT TCTGGCGGTA
CTCGCAACGC TATTTGGTCT CGCGACTTCT CTGGGCTTAG GTGCGCAACA AGCCACCAGC
GGTATTAACC ATGTATTTGG TTTAGAAGGT GGTATTGGTA CGCAAATGAT TGTTATCGCC
TTCGTTACTT TTATTGCAGT ACTGTCTGTG ATTCGAGGTA TCGATGGAGG TGTCAAACTA
CTAAGTAACA TCAATATGGC GGTTGCGTTT GCGCTGCTGG CTTTTGTGAT GTTTATTAGC
TTCGATATTG CGACAACATC CATTTGGGAT ACCGCTGTCG CGTACGCACA GAATATTTTA
CCGCTAAGTA ACCCTGCAGG TCGTGAAGAC ACAGAATGGA TGCATGGCTG GACAGTATTC
TACTGGGCAT GGTGGGTATC TTGGTCACCA TTTGTGGGAA TGTTCATCGC GCGCGTATCG
AAAGGTCGTA CTGTTCGCGA ATTTATCTTC GCGGTTATTG TCATTCCAAC TACCGTTACA
CTTGTTTGGA TGGCAGTCTT CGGTGGTATC GCCCTTGATC AAGTGGTGAA CAAAGTCGGC
GAACTTGGTG CCAATGGATT AACGGATATC TCGCTTACTC TATTCCACGT TTATGACGCG
ATGCCGTTTA GCTCGATCAT CTCTGTGCTC TCTATCGTCC TGATTTTGGT GTTCTTCATC
ACCTCATCAG ATTCTGGCTC ATTAGTTATC GATAGCATCA CTGCCGGCGG TAAGATTGAT
GCACCAGTGC CACAACGTAT TTTCTGGGCA TGTATTGAAG GCTCTATCGC TGCCGTTATG
CTCTGGATTG GTGGTAAAGA AGCACTGCAA GCTCTGCAAT CTGGTGTTGT CGCGACAGGT
TTGCCATTCA CATTGGTGCT GTTAGTGATG TGTGTGAGCC TGATTAAAGG GTTAAGGTCT
GAGTTACCTG CCTATCAAAA CGCGGCGCAG AACGCGTCTG TCGCCTAA
|
|---|
| Protein sequence | MDNALKKYSI DTTDYQVGQD NVQKWGFDIH NPVFGISAGL VLLCLASLLI VDPATARDAL
NGLKNSIISD FDSFFMWSAN FFILFAIAIL LSPLGKIRIG GKDAVVEHST VSWLSMLFAA
GMGIGLLFWS VSEPTAYFTN WFGTPLNVEP YTEEAKSLAM AATMFHWGIH GWAIYAIVAL
SLAFFAFNKG LPLSLRSAFY PIFGDRAWGW LGHVIDILAV LATLFGLATS LGLGAQQATS
GINHVFGLEG GIGTQMIVIA FVTFIAVLSV IRGIDGGVKL LSNINMAVAF ALLAFVMFIS
FDIATTSIWD TAVAYAQNIL PLSNPAGRED TEWMHGWTVF YWAWWVSWSP FVGMFIARVS
KGRTVREFIF AVIVIPTTVT LVWMAVFGGI ALDQVVNKVG ELGANGLTDI SLTLFHVYDA
MPFSSIISVL SIVLILVFFI TSSDSGSLVI DSITAGGKID APVPQRIFWA CIEGSIAAVM
LWIGGKEALQ ALQSGVVATG LPFTLVLLVM CVSLIKGLRS ELPAYQNAAQ NASVA
|
|---|
| |