| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_04821 |
|---|
| Symbol | lamB |
|---|
| ID | 5558593 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009784 |
|---|
| Strand | + |
|---|
| Start bp | 84580 |
|---|
| End bp | 85923 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640909300 |
|---|
| Product | maltoporin |
|---|
| Protein accession | YP_001446957 |
|---|
| Protein GI | 156976051 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4580] Maltoporin (phage lambda and maltose receptor) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGTTAA GAATGAAAAA AGTAAGTGTA ATTGCAGCGG CTGTTGCTGC AACTTTAGCT
GCTGGTTCTG CTTTCGCAGT TGATTTCCAC GGTTACATGC GTGCTGGTGT TGGTGTGAGC
GCTGATGGTG GTCAACAAGT AACATTTGAG AAGCAAAAAA TTGGCCGTCT AGGTAACGAA
GGCGACATCT ACGGGGAAAT CCAATTAGGT CAAGAAGTTT ACAACAACAA CGGTAAAACG
TTCTACGTAG ATTCGATGAT CGCAGTAACT TCTAACGGCT CTAACGATTG GGAAGGTACA
GCATCTAACT GTGGGACAAC CGTAAGTCAC CCTGATGGTC AAGATCCTAG TGCAACAACA
AAGTGTGTTG ACGATGCAGA ATTTGCTCTA CGTCAGTTCA ACGTTCAAGC TAAAGGCGTT
CTAGACTTCG CTCCAGAAGC AACGCTATGG GCTGGTAAGC GTTACTACCA ACGTCACGAC
ATCCATATTT CTGACTTCTA CTACTGGAAC ATCTCTGGTG CGGGCGCTGG TGTTGAAGGT
ATCGAAGCTG GTCCAGGTCA ATTATCTTTT GCATGGGTTC GTAATGACCG CAACGATAAC
TTCAAGCTAG GTGAAAACAA TCCTGGCGAT ACGCCTGATG CAGGCAACGA TGGCGGTGCA
GCGAACGTTA ATACTCTAGA CTTACGTTAC GCGGGTCTTC CTGTATGGGA AAACGGCTCT
CTAGAACTTG GCCTAAACTA TGCCCTAGTT AACGAAACTG ATGACGCGTC TGATGCAGCA
AAAGACGCTA AAGATGGCGT AATGTTCACA GCTGAATTGA CTCAAGGTCT AGATTCAGGC
TTCAACAAAA CAGTATTCCA GTACGGTACA GAAGGCTACT CTAAAACAAT GGCGTTCTAC
GGCGACGGTA GCTGGTACGG TGCAGAAGCT AACGACGGTG CATCTGGTTA CCGCCTAATC
AACTGGGGTG TAATCGGCAT GGGCCAAAAC TGGGAAATGG GTCACCAGTT AGTATATGGC
GTTGGCGAAG ACATGTGGGA TGGCCAAGAC AAGTTGGAAA CCATGTCTGT AGTTGTTCGT
CCAATGTACA AATGGGATGA CAACCACAAA ACTATCTTCG AAGCTGGTTA CGCTATCGAT
GATAACGACG GTGCAGAGAA CAAGTTCGGT AAACTAACTG TTGCTCAAGC ATGGTCTGCT
GGCTCTAGCT TCTGGGCTCG TCCTGAAATC CGCGTTTACG CGTCTTACCT AACTGCAGAT
AAAGACGACA ACTCAAACGC ATTCGACGGC GGTCGTTCAG ACGATACATT CCAATTCGGT
GTACAAGCTG AAGCTTGGTG GTAA
|
|---|
| Protein sequence | MELRMKKVSV IAAAVAATLA AGSAFAVDFH GYMRAGVGVS ADGGQQVTFE KQKIGRLGNE
GDIYGEIQLG QEVYNNNGKT FYVDSMIAVT SNGSNDWEGT ASNCGTTVSH PDGQDPSATT
KCVDDAEFAL RQFNVQAKGV LDFAPEATLW AGKRYYQRHD IHISDFYYWN ISGAGAGVEG
IEAGPGQLSF AWVRNDRNDN FKLGENNPGD TPDAGNDGGA ANVNTLDLRY AGLPVWENGS
LELGLNYALV NETDDASDAA KDAKDGVMFT AELTQGLDSG FNKTVFQYGT EGYSKTMAFY
GDGSWYGAEA NDGASGYRLI NWGVIGMGQN WEMGHQLVYG VGEDMWDGQD KLETMSVVVR
PMYKWDDNHK TIFEAGYAID DNDGAENKFG KLTVAQAWSA GSSFWARPEI RVYASYLTAD
KDDNSNAFDG GRSDDTFQFG VQAEAWW
|
|---|
| |