Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VIBHAR_03241 |
Symbol | |
ID | 5553837 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio harveyi ATCC BAA-1116 |
Kingdom | Bacteria |
Replicon accession | NC_009783 |
Strand | - |
Start bp | 3268879 |
End bp | 3269646 |
Gene Length | 768 bp |
Protein Length | 255 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640908722 |
Product | tRNA pseudouridine synthase C |
Protein accession | YP_001446417 |
Protein GI | 156975510 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAGAAC AAGAAATATC ACCATCTGTT GACCCCGTTG TATTAGAGAT CGTTTATCAG GACGAGTACT TTGTTGCGGT GAACAAACCT GCAGGTATGT TAGTCCATCG CAGTTGGTTG GATAAGCATG AGACTCAATT CGTGATGCAA ACGCTACGCG ATCAAATTGG TCAGCATGTT TTCCCATTGC ACCGTTTGGA TCGTCCTACT TCTGGTGTGC TTGTGTTTGC TTTGTCCAGT GAAGTGGCAT CGCAAGTCAT GCCAATGTTT GCAGAGCATA AGATGGAGAA GACCTATCAC GCGATCGTTC GTGGCTGGAT CGAAGAAGAG GGTGTGCTAG ATTACGCTCT GAAAGTTGAA CTCGATAAGA TCGCCGATAA GTTTGCTTCG CAAGAGAAAG AAGCACAAGA AGCAGTAACG GCATACAAAC CGCTAGCAAA AGTGGAAGTA CCTTATTCAA CGGGTAAGTT CCCAACCACG CGCTACTGTT TGATGGAAAT GAAGCCAAAG ACAGGGCGTA AGCACCAGCT GCGTCGTCAT ATGGCTCACC TGCGTCATCC TATTGTTGGT GATACAACAC ATGGTGATGG TAAGCACAAC AAGTTGTATC GCACGGAATT CGACTCTCAC CGACTGTTGC TGCATGCATC AGAGCTGCGC TTTGTGCATC CGTTTACCGA CGAAAAAATC GTGATGAAAG CCAATATCGA TGAGACTTGG CAGCAGTTGT TCACTCGATT TGAGTGGGAT GAATCGTTGG TAAAATAA
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Protein sequence | MSEQEISPSV DPVVLEIVYQ DEYFVAVNKP AGMLVHRSWL DKHETQFVMQ TLRDQIGQHV FPLHRLDRPT SGVLVFALSS EVASQVMPMF AEHKMEKTYH AIVRGWIEEE GVLDYALKVE LDKIADKFAS QEKEAQEAVT AYKPLAKVEV PYSTGKFPTT RYCLMEMKPK TGRKHQLRRH MAHLRHPIVG DTTHGDGKHN KLYRTEFDSH RLLLHASELR FVHPFTDEKI VMKANIDETW QQLFTRFEWD ESLVK
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