Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VIBHAR_03149 |
Symbol | fliR |
ID | 5554258 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio harveyi ATCC BAA-1116 |
Kingdom | Bacteria |
Replicon accession | NC_009783 |
Strand | - |
Start bp | 3179860 |
End bp | 3180642 |
Gene Length | 783 bp |
Protein Length | 260 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640908630 |
Product | flagellar biosynthesis protein FliR |
Protein accession | YP_001446325 |
Protein GI | 156975418 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAGTATC CGACCCATAT CGTCCTCGAC TGGATCGCAA ACTACTTTTG GCCCTATACC CGCATCTCTG CCATGTTGAT GGTGATGACG GTAACTGGGG CACGCTTCGT CTCGCCTCGA ATTCGGCTCT ATCTTGGTCT CGCGATCACT TTTGCGGTCG CGCCTGCGAT TCCTGCCGTG CCTCAAGACA TTGAATTACT CTCTTTCCGT GGTTTTATGA CCATCGCAGA GCAAATCGTT ATTGGCGTTG CGATGGGCAT GGTGACCCAG TTTATGATTC AAACCTTTGT TCTACTTGGT CAGATCTTGG GTATGCAATC GAGCTTGGGT TTTGCCTCGA TGGTGGACCC TGCGAACGGT CAAAACACGC CTTTGCTTGG TCAGCTGTTT ATGTTTTTGG CGACCATGTT CTTCCTCGCT ACCGACGGGC ATTTAAAAAT GCTGCAACTG GTGGTGTTCA GCTTTAAAAC CTTGCCGATT GGGTCCGGTT CGCTCAATGC GGTCGACTTC CGTGAAATGG CGAGTTGGCT TGGCATCATG TTTAAGACGG CACTCAGTAT GTCGTTGTCG GGCATTATTG CGCTGCTGAC GATTAACTTG TCATTCGGTG TAATGACACG CGCTGCACCA CAGCTGAACA TCTTCTCGCT TGGTTTTGCC TTCGCCTTGA TGGTGGGCTT GTTACTTTGT TGGTACATCT TGGCTGGTTT GTACAGTCAT TATGAATTGT TCTGGGCTGT AGGTGAGGAA CAGATTTGTA ACCTCATTCG CTTGGATTGC TAG
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Protein sequence | MEYPTHIVLD WIANYFWPYT RISAMLMVMT VTGARFVSPR IRLYLGLAIT FAVAPAIPAV PQDIELLSFR GFMTIAEQIV IGVAMGMVTQ FMIQTFVLLG QILGMQSSLG FASMVDPANG QNTPLLGQLF MFLATMFFLA TDGHLKMLQL VVFSFKTLPI GSGSLNAVDF REMASWLGIM FKTALSMSLS GIIALLTINL SFGVMTRAAP QLNIFSLGFA FALMVGLLLC WYILAGLYSH YELFWAVGEE QICNLIRLDC
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