Gene VIBHAR_03041 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_03041 
Symbol 
ID5553779 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009783 
Strand
Start bp3062365 
End bp3064329 
Gene Length1965 bp 
Protein Length654 aa 
Translation table11 
GC content49% 
IMG OID640908523 
ProductDNA topoisomerase III 
Protein accessionYP_001446218 
Protein GI156975311 
COG category[L] Replication, recombination and repair 
COG ID[COG0550] Topoisomerase IA 
TIGRFAM ID[TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTCGTC TGTTTATTGC TGAAAAACCA AGTTTAGGCC GTGCGATTGC GGCTGCACTG 
CCAAATCCTC AAAAGAAAGA TCAAGGCTTT ATCCGCTGTG GTAATGGCGA TGTGGTGACT
TGGTGTATTG GCCACTTGTT GGAGCAAGTC GAACCAGATG CTTATGACGA ACGCTACAAA
AAATGGAATA TGGCAGACTT GCCGATTGTC CCACAGCAGT GGCAGCTGAG ACCGCGAAAA
AGCGCCAGCA AACAGCTCAC GGTAATACGT AAACTCCTCA AAGATGCGAC AGAAGTTATC
CACGCAGGAG ACCCCGACCG AGAGGGACAA TTGTTGGTGG ATGAGGTATT GGATTACTGC
AAGCTTTCCA AAACCAAAAA AGAAGCCACA CAACGCCTAC TGATCTCTGA CTTGAACTTA
CCTGCGGTCA AGCGTGCCTT GAGCTCGATG CGCAGTAATC GCGACTTCAT ACCTCTTTCT
GTTTCAGCTC TGGCGCGTTC TCGCGCTGAT TGGCTTTATG GAATGAACAT GTCTCGCGCC
TATACCTTGT TGGGCCAAAA AGCGGGCTAT CAAGGTGTCT TATCAGTAGG GCGAGTTCAA
ACTCCGGTAC TTGGCTTGGT GGTTCGCCGC GATGAAGAAA TCGAAAACTT TGTACCGAAA
GATTACTTCA CTCTGCATGC TTTAATTCCT TATCAAGATC AAAATGGCGC ATTTGATATT
CGCGCTCGTT GGAAACCAAG TGAAGCTTGT AAGCCTTGGC AGGACGAAGA AGGACGGGTA
TTGAGCAGAA AGTTGGTTGA GAACGTAGCA AACCGCATAG CCAATCAACC TGCCAAAGTG
ACCGAGTCTG AACAGAAGCA AACCAAGCAA TCAGCACCGC TTCCGTATTC GTTATCCGCA
CTGCAGATTG ATGCGGCAAA ACGCTATGGC ATGAGTGCTC AGCAGGTATT GGATACTTGT
CAGGCGCTGT ATGAAAAGCA TAAGCTCATT ACGTACCCAC GTTCGGACTG TCGTTACTTA
CCATTGGAGC ATTACTCGCA AGCAGGCTCT GTTACATCGG CTATCGCTAA CAATGCCAAA
GAACTACAAA GCGCAGTTCA AGGTGCAGAC TTATCGATTA AGTCCAAGGC GTGGAACGAC
AAGAAAGTCG ATGCCCACCA TGCGATCATT CCAACGCCGA AGCAGGCAAA TGTGAATGCG
TTATCTGGCA ATGAGATGAA GGTTTATCAA CTGATTGCTC GTCAATACTT GATGCAATTT
TATCCAGCGG CGGTATATGC CGAGGCTAAA TTGGTGTTTG ATATTGCTGG TGGTACATTT
ATCGCCAAAG GTCGCCAACT GGTTTCTCCA GGCTGGAAAG CGTTAATGGG AAAAACGGAT
AAAGAAGACG ATGGCATTGA TGCTGTCCCG CCGCTCGCAG AAGGCACGGT GTTGACCTGC
CGAGAAGGTG AAATCAAAGA CCGTAAGACT GAACCGCCAA AGCACTTTAC AGAAGCAACA
CTGCTTCAGG CCATGACGGG TATTGCTCGT TATGTTGCAG ACAAAGAACT GAAGAAGATC
CTGCGCGACA CCGATGGCTT AGGAACAGAA GCGACTCGAG CCGGTATTCT GGATACGCTT
TTTAAGCGTC AGTTGCTGAC TCGTCAGGGT AAATCAATTT TGAGCTCACC AGCGGGGCGA
GGCTTGATTC ATGCCCTACC AATGGATGCG ACCTATCCTG ATATGACGGC GCACTGGGAA
CACCAGTTGC AAGGAATGGC AGAACGAAAT CAAGCGTATC AGCCTTTCAT GCAAGCGTTA
GAGCAGCGCA TTGATGGATT AATGGGCGAA GTGAAATCGG GCCCGATTCC TGATTCGTTA
CGTCATTTGC CTAAAGTCGA GCGTCCGGCA TTCAAACGTG AAAAACGCAG CTATTCGAAG
GGCGGAGCAT CGAAATCAAG CTCAGGTAAG CGGCAGTCTT CATAA
 
Protein sequence
MSRLFIAEKP SLGRAIAAAL PNPQKKDQGF IRCGNGDVVT WCIGHLLEQV EPDAYDERYK 
KWNMADLPIV PQQWQLRPRK SASKQLTVIR KLLKDATEVI HAGDPDREGQ LLVDEVLDYC
KLSKTKKEAT QRLLISDLNL PAVKRALSSM RSNRDFIPLS VSALARSRAD WLYGMNMSRA
YTLLGQKAGY QGVLSVGRVQ TPVLGLVVRR DEEIENFVPK DYFTLHALIP YQDQNGAFDI
RARWKPSEAC KPWQDEEGRV LSRKLVENVA NRIANQPAKV TESEQKQTKQ SAPLPYSLSA
LQIDAAKRYG MSAQQVLDTC QALYEKHKLI TYPRSDCRYL PLEHYSQAGS VTSAIANNAK
ELQSAVQGAD LSIKSKAWND KKVDAHHAII PTPKQANVNA LSGNEMKVYQ LIARQYLMQF
YPAAVYAEAK LVFDIAGGTF IAKGRQLVSP GWKALMGKTD KEDDGIDAVP PLAEGTVLTC
REGEIKDRKT EPPKHFTEAT LLQAMTGIAR YVADKELKKI LRDTDGLGTE ATRAGILDTL
FKRQLLTRQG KSILSSPAGR GLIHALPMDA TYPDMTAHWE HQLQGMAERN QAYQPFMQAL
EQRIDGLMGE VKSGPIPDSL RHLPKVERPA FKREKRSYSK GGASKSSSGK RQSS