| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_02917 |
|---|
| Symbol | |
|---|
| ID | 5555209 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009783 |
|---|
| Strand | - |
|---|
| Start bp | 2935256 |
|---|
| End bp | 2936275 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640908398 |
|---|
| Product | rRNA ribosomal pseudouridine synthase |
|---|
| Protein accession | YP_001446096 |
|---|
| Protein GI | 156975190 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGGCG ACAAGTGTTT CTTTTGCCGC AAGAATAATG TGAAGTCGTA CAGATTTGGG
TTTACAATAC CGCCCATGAG CGAAATAAGA ACAAAAGTCC AGTTCGTTGA TATCGACGAA
GACATGGCGG GTCAACGCAT TGATAACTTT CTGCGTAACC AATTAAAAGA CATTCCCAAA
AGCATGATTT ACCGAATCGT GCGTAAGGGT GAAGTGCGCG TTAATAAAAA ACGTATTAAA
GCCGAGTACA AACTTAAGGC AGGCGATCTC GTACGTATCC CTCCGGTAAC GGTCGAGAAG
AAAGAAGACG ATGTCGCACC GAGTACTAAG TTAAATAAAG TGGCAGAACT AGAACATATG
ATCATTTTTG AAGATGACCA TATGTTGGTG CTAAATAAAC CATCTGGTAC AGCAGTACAT
GGTGGCAGTG GTTTGAAGTT TGGCGCGATT GAGGCACTTC GAGCATTACG CCCACAGGCA
CGCTTTTTAG AACTGGTTCA TCGTATTGAC CGTGACACTT CCGGCATTTT GTTAGTTGCT
AAGAAGCGTT CGGCATTGCG TCACCTGCAA GCACAGTTCC GTGAAAAGAC AGTGAAGAAG
TTCTACTTCG CGCTTGTCAT GGGTGAGTGG AAAAACAGCT GCAAAGTCGT TAATGCGCCG
CTACTCAAAA ATGAAGTCAA CAGTATCGTA CGTGTGAACC CAAATGGTAA ACCGTCAGAA
ACGCGCTTCA AGGTTTTGGA AAGGTTTGAG CAGGCGACGT TGATTCAAGC AAGTCCGATT
ACCGGCCGTA CTCACCAGAT TCGTGTGCAT ACTCAATACA CAGGTCATCC AATCGCATGG
GATGATCGTT ACGGTGACCG CCGCTTTGAT GCTTATACTG GCCAAGTTGG TTTGGACCGT
TTGTTCCTTC ATGCGGCGAA CATCAAGTTC CAGCACCCAT CGAATGATGA GTGGATGGAG
ATCAACGCGC CGATGGAAGC TAAGCTTGAA AAAGTGTTGG TAGGTCTACG TAAGAAGTAG
|
|---|
| Protein sequence | MNGDKCFFCR KNNVKSYRFG FTIPPMSEIR TKVQFVDIDE DMAGQRIDNF LRNQLKDIPK
SMIYRIVRKG EVRVNKKRIK AEYKLKAGDL VRIPPVTVEK KEDDVAPSTK LNKVAELEHM
IIFEDDHMLV LNKPSGTAVH GGSGLKFGAI EALRALRPQA RFLELVHRID RDTSGILLVA
KKRSALRHLQ AQFREKTVKK FYFALVMGEW KNSCKVVNAP LLKNEVNSIV RVNPNGKPSE
TRFKVLERFE QATLIQASPI TGRTHQIRVH TQYTGHPIAW DDRYGDRRFD AYTGQVGLDR
LFLHAANIKF QHPSNDEWME INAPMEAKLE KVLVGLRKK
|
|---|
| |