Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VIBHAR_02455 |
Symbol | |
ID | 5556204 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio harveyi ATCC BAA-1116 |
Kingdom | Bacteria |
Replicon accession | NC_009783 |
Strand | - |
Start bp | 2468921 |
End bp | 2470669 |
Gene Length | 1749 bp |
Protein Length | 582 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640907941 |
Product | choline/carnitine/betaine transporter |
Protein accession | YP_001445644 |
Protein GI | 156974737 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1292] Choline-glycine betaine transporter |
TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGACACAAG AAAGTCATCA CTCGGCTTCC TACATCAAAC TTAATTTGAA CTTAAATATA GTCACGTTTT TGAGGAGACA AATCGTGAGC ACCGACAACA ATGGCGGTAT ACAACGCCCC GACGGTAAGG TGAACCCGAT CGATACTGAT TACCAGATTG GTCAGGACAA CGTCGCGTTA AAAGTAGGTC CTTTTGGACT TGATATTCAC AACCGTGTGT TTGCTATTTC AGGTATGTCG ATCATCCTGT TCGTAGTGTT AACACTGACA TTCAGACAAC AAGTAGAACC GTTTTTTGCG GGTTTGCGTG GTTGGCTAGT GTCGAATCTT GATTGGTTCT TCCTATCTGC AGGCAACGTG TTTGTCGTGG TGTGTTTGAT CCTGATCGTA ACGCCACTTG GTCGCGTTCG TATCGGCGGT ACAGAAGCAA CACCGGACTA CACTTACGCA GGCTGGTTAG CGATGCTATT CGCTGCTGGT ATGGGTATCG GTCTGGTATT CTTCGGCGTA TCTGAACCTA TGTCTCACTT CAGTGCTGCT CTTGGCGGTG TGAACGTTGA GAATGGTGTT CGTACTGACT GGGCTCCACT AGGCGCAGCA GAGGGTGATA CATCAGCGGC ATCTGCACTG GGTATGGCAG CAACGATTTA CCACTGGGCA CTTCACCCAT GGTCAATCTA CGCACTATTG GCACTTGGCT TGGCGATCTT CTCGTTCAAC AAGGGCTTAC CTCTAACGAT GCGTTCTATT TTCTATCCTC TTTTTGGCGA GCGAGTTTGG GGTTGGGTTG GTCACATTAT TGATATCTTA GCGGTAGTTG CGACGGTATT TGGTCTTGCG ACTTCTCTTG GTTACGGCGC ATCACAAGCA GCTACAGGTC TAAACTTCCT GTTCGGTATT CCGATGACAG AGACAACGCA AGTTGTGCTT ATCGTAATCA TCACAGCACT TGCTTTGATC TCAGTAGTCG CTGGTTTGGA TAGTGGTGTA AAACGTCTGT CTGAAATCAA CATGGGCTTA GCGGCACTAT TGCTTTTGTT CGTGATCATC GTGGGCCCGA CAGTCGCTAT CATGACTGGT TTCTTCGAGA ACATCATGTC CTATCTTGCG AATGTTCCTG CGCTTTCAAT GCCATTTGGT CGTGAAGACG TGAACTACTC TCAAGGTTGG ACTGCGTTCT ACTGGGCTTG GTGGATTTCA TGGTCACCAT TCGTAGGTAT GTTTATCGCG CGTGTATCTC GTGGCCGTTC AGTTCGTGAG TTCATCGTGT GTGTAATCCT GATCCCATCA ACCGTGTGTG TATTATGGAT GACGGCATTC GGTGGTACGG CGATCAGCCA ATACGTGAAC GATGGTTACC AAGCGGTATT TGATGCAGAG CTTCCACTTA AACTGTTCGC GATGCTAGAT GTGATGCCAC TGTCTCAAAT CACCTCTATC GTAGGTATTA TTCTGGTTGT GGTGTTCTTC ATCACTTCTG CGGACTCTGG CTCGCTTGTG ATCGATACGA TTGCAGCTGG CGGTAAAGTA GATGCACCAA CACCTCAACG TGTATTCTGG TGTACATTTG AAGGCTTAGT TGCAATCGCG CTAATGCTTG GCGGTGGTCT CGCGGCTGCA CAAGCGATGG CGGTAACAAC TGGTCTGCCA TTCACTATCG TATTGTTGGT TGCAACGGTA TCTCTAGTGA AAGGTTTGAT GGATGAGCCT CGCCCAACAT CAAAATCAAT GAAGAAAGCG AAAGCGTAA
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Protein sequence | MTQESHHSAS YIKLNLNLNI VTFLRRQIVS TDNNGGIQRP DGKVNPIDTD YQIGQDNVAL KVGPFGLDIH NRVFAISGMS IILFVVLTLT FRQQVEPFFA GLRGWLVSNL DWFFLSAGNV FVVVCLILIV TPLGRVRIGG TEATPDYTYA GWLAMLFAAG MGIGLVFFGV SEPMSHFSAA LGGVNVENGV RTDWAPLGAA EGDTSAASAL GMAATIYHWA LHPWSIYALL ALGLAIFSFN KGLPLTMRSI FYPLFGERVW GWVGHIIDIL AVVATVFGLA TSLGYGASQA ATGLNFLFGI PMTETTQVVL IVIITALALI SVVAGLDSGV KRLSEINMGL AALLLLFVII VGPTVAIMTG FFENIMSYLA NVPALSMPFG REDVNYSQGW TAFYWAWWIS WSPFVGMFIA RVSRGRSVRE FIVCVILIPS TVCVLWMTAF GGTAISQYVN DGYQAVFDAE LPLKLFAMLD VMPLSQITSI VGIILVVVFF ITSADSGSLV IDTIAAGGKV DAPTPQRVFW CTFEGLVAIA LMLGGGLAAA QAMAVTTGLP FTIVLLVATV SLVKGLMDEP RPTSKSMKKA KA
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