| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_02397 |
|---|
| Symbol | prpB |
|---|
| ID | 5556087 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009783 |
|---|
| Strand | - |
|---|
| Start bp | 2406993 |
|---|
| End bp | 2407889 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640907883 |
|---|
| Product | 2-methylisocitrate lyase |
|---|
| Protein accession | YP_001445586 |
|---|
| Protein GI | 156974679 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
|---|
| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTAT CTCCGGGGGC GAAGTTCAGA CTCGCCATTG AGCAAAACAA CCCGCTGCAG
ATCGTTGGCA CCATTAACCC ATACTGCGCC ATGATGGCGA AAAATTTGGG TCACCAAGCT
ATCTATTTGT CGGGTGGCGG CATCGCCAAT GCGTCTTACG GTTTGCCAGA TCTTGGCATT
ACGACATTGA ACGATGTTTT GGTGGATGTG GACCGCATCA ACAACGCGTG TGATCTGCCG
TTATTGGTTG ATATCGATAC CGGTTTCGGC GGTGCATTTA ATATTGCTCG AACCATTAAA
GCGATGGAAA AAGCAGGTGC GGCGGCAGTG CATATGGAAG ACCAAGTGGC ACAGAAGCGC
TGTGGTCATC GCCCAAACAA AGCGATTGTT AGCCAACAAG AAATGGTCGA CCGAGTGAAA
GCGGCGGTGG ATGCACGTAA TGACGAGAGT TTTGTCATTA TGGCTCGTAC TGATGCGCTA
GCGGTGGAAG GCATGGACAG TGCGATTGAA CGTGCGATTG CATGTGTGGA AGCGGGCGCA
GACATGATCT TCCCAGAAGC AATGAATCAG CTTGACCAAT ATCAACAGTT CTCGACAGCG
CTCGAAGACG CGACAGGGAA GCACGTGCCG ATTCTTGCCA ACATTACTGA GTTTGGACAA
ACGCCGTTAT ACGGTTGTGA AGAGTTAGCC CAATCCAACG TCGACATGGT TTTGTACCCA
TTGAGCGCAT TCCGTGCGAT GAACAAAGCT GCCGAGATGG TTTACAAACA CTTGCTTGAA
GTTGGAAACC AAGAAGCGTT GCTTGATTCA ATGCAGACGC GAAAAGAGCT GTATGAGCAC
CTTAATTACC ACGACTACGA GAATAAGTTA GACAAACTTT TCTCCGAGGG TAAATAA
|
|---|
| Protein sequence | MSLSPGAKFR LAIEQNNPLQ IVGTINPYCA MMAKNLGHQA IYLSGGGIAN ASYGLPDLGI
TTLNDVLVDV DRINNACDLP LLVDIDTGFG GAFNIARTIK AMEKAGAAAV HMEDQVAQKR
CGHRPNKAIV SQQEMVDRVK AAVDARNDES FVIMARTDAL AVEGMDSAIE RAIACVEAGA
DMIFPEAMNQ LDQYQQFSTA LEDATGKHVP ILANITEFGQ TPLYGCEELA QSNVDMVLYP
LSAFRAMNKA AEMVYKHLLE VGNQEALLDS MQTRKELYEH LNYHDYENKL DKLFSEGK
|
|---|
| |